dnaA:Gene Product(s): Difference between revisions

Standard name	DnaA product
Synonyms	chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator product^[1], B3702 product^[2]^[1], DnaA product^[2]^[1], DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator product^[2]^[1]
Product description	DnaA transcriptional dual regulator^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide_binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0006261	DNA-dependent DNA replication	PMID:2839499^[5]	IDA: Inferred from Direct Assay		P	Seeded from EcoCyc 11.1^[3].	complete
	GO:0005737	cytoplasm				C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006350	transcription				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016564	transcription repressor activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016563	transcription activator activity				F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0000166	nucleotide_binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MSLSLWQQCL ARLQDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN GLLTSFCGAD APQLRFEVGT KPVTQTPQAA VTSNVAAPAQ VAQTQPQRAA PSTRSGWDNV PAPAEPTYRS NVNVKHTFDN FVEGKSNQLA RAAARQVADN PGGAYNPLFL YGGTGLGKTH LLHAVGNGIM ARKPNAKVVY MHSERFVQDM VKALQNNAIE EFKRYYRSVD ALLIDDIQFF ANKERSQEEF FHTFNALLEG NQQIILTSDR YPKEINGVED RLKSRFGWGL TVAIEPPELE TRVAILMKKA DENDIRLPGE VAFFIAKRLR SNVRELEGAL NRVIANANFT GRAITIDFVR EALRDLLALQ EKLVTIDNIQ KTVAEYYKIK VADLLSKRRS RSVARPRQMA MALAKELTNH SLPEIGDAFG GRDHTTVLHA CRKIEQLREE SHDIKEDFSN LIRTLSS
Mol. Wt	52.55 kDa (calc) ^[2]
pI	8.67^[2]
Extinction coefficient	43890 - 44265 (calc based on 11 Y, 5 W, and 3 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession	Residues covered	Notes
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:PD03831
SwissModel (EcoliWiki Page)	SwissModel:P03004
UniProt (EcoliWiki Page)	UniProt:P03004
RefSeq (EcoliWiki Page)	RefSeq:NP_418157
ModBase (EcoliWiki Page)	ModBase:P03004
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ Hwang, DS & Kaguni, JM (1988) Purification and characterization of the dnaA46 gene product. J. Biol. Chem. 263 10625-32 PubMed

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 !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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+[[Category:GO:0000166_!_nucleotide_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0000166_!_nucleotide_binding GO:0000166]
+|
+nucleotide_binding
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+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+|
+IEA: Inferred from Electronic Annotation
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+InterPro:IPR003593
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+F
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+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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 nucleotide_binding
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-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
 |
 IEA: Inferred from Electronic Annotation
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-InterPro:IPR003593
+SP_KW:KW-0547
 |
 F

dnaA:Gene Product(s): Difference between revisions

Revision as of 23:47, 29 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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dnaA:Gene Product(s): Difference between revisions

Revision as of 23:47, 29 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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