yffL:Gene: Difference between revisions
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!Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | [http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | ||
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7273 EcoCyc:G7273] | [http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7273 EcoCyc:G7273] | ||
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]]) | [http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]]) | ||
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3925 EchoBASE:EB3925] | [http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3925 EchoBASE:EB3925] | ||
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]]) | [http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]]) | ||
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[http://chase.ou.edu/macro/searchlink.php?bnum=b2443 EcoliGenExpDB:b2443] | [http://chase.ou.edu/macro/searchlink.php?bnum=b2443 EcoliGenExpDB:b2443] | ||
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) | [http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) | ||
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[http://ecogene.org/geneinfo.php?eg_id=EG14173 EcoGene:EG14173] | [http://ecogene.org/geneinfo.php?eg_id=EG14173 EcoGene:EG14173] | ||
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]]) | |||
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0008055&formSubmitReturn=1 ASAP:ABE-0008055] | |||
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Revision as of 23:59, 15 September 2008
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
yffL |
|---|---|
| Mnemonic | |
| Synonyms |
ECK2438, b2443, unique to MG1655[1] |
| edit table | |
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Notes
Location(s) and DNA Sequence
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
55.14 minutes |
MG1655: 2558279..2558920 |
||
| edit table |
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Notes
Sequence Features
| Feature type | Location | Description |
|---|---|---|
| edit table |
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Notes
Alleles and Phenotypes
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Notes
Genetic Resources
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
|
Linked marker |
est. P1 cotransduction: 11% [4] | ||
|
Linked marker |
est. P1 cotransduction: 24% [4] | ||
| edit table |
See Help:Gene_resources for help entering information into the Genetic Resources table.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
- ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).