ftsK:Gene: Difference between revisions

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''ECK0881, b0890, JW0873, dinH''<ref name='LIB:Riley_2006'/>
''ECK0881, b0890, JW0873, dinH''<ref name='LIB:Riley_2006'/>
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:933646..937635&plugin_action=Go FASTA Dump]  
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!Feature type!!Location!!Description
!Feature type!!Location!!Description
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Carries swaps b/t ''E.coli'' and ''H.influenzae'' FtsK regions  
Carries swaps b/t ''E.coli'' and ''H.influenzae'' FtsK regions  
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Synonyms:zbj-1230::Tn10  
Synonyms:zbj-1230::Tn10  
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!Name!!URL!!Comments
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Revision as of 08:14, 30 April 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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Standard name

ftsK

Mnemonic
Synonyms

ECK0881, b0890, JW0873, dinH[1]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

20.1 minutes 

MG1655: 932447..936436
gbrowse_img.php?coord=931447..937436&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 933646..937635
gbrowse_img.php?coord=932646..938635&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

deltaLC

PMID:15522074[2]

Carries a deletion of FtsK L and FtsK C

NC

PMID:15522074[2]

Barre

Deletion of the FtsK Linker

NL hi C

PMID:15522074[2]

Barre

Carries swaps b/t E.coli and H. influenzae FtsK regions

ftsK A

K997A

PMID:15522074[2]

Barre

Carries a single point mutation in the walker A motif of FtsK C

NLC hi

PMID:15522074[2]

Barre

Carries swaps b/t E.coli and H.influenzae FtsK regions

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Deletions that leave the membrane segments intact are viable.[3]

Genetic Resources

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Resource Resource Type Source Notes/Reference

JW0873

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCAGCCAGGAATACATTGAAGA

Primer 2:CCGTCAAACGGCGGTGGGGCCAG

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[5]

est. P1 cotransduction: % [6]

Synonyms:zbi-29::Tn10

zca-1230::Tn10

Linked marker

CAG18478 = CGSC7356[5]

est. P1 cotransduction: 61% [6]

Synonyms:zbj-1230::Tn10

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6464

EchoBASE (EcoliWiki Page)

EchoBASE:EB3016

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0890

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1027

EcoGene (EcoliWiki Page)

EcoGene:EG13226

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:FTSK

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 Bigot, S et al. (2004) FtsK activities in Xer recombination, DNA mobilization and cell division involve overlapping and separate domains of the protein. Mol. Microbiol. 54 876-86 PubMed
  3. ↑ Draper, GC et al. (1998) Only the N-terminal domain of FtsK functions in cell division. J. Bacteriol. 180 4621-7 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


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