galE:Gene Product(s): Difference between revisions

Standard name	GalE product
Synonyms	UDP-galactose-4-epimerase product^[1], B0759 product^[2]^[1], GalD product^[2]^[1], GalE product^[2]^[1]
Product description	UDP-glucose 4-epimerase monomer^[2]^[3]; Component of ; UDP-glucose 4-epimerase^[2]^[3]
EC number (for enzymes)	5.1.3.2^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Aspect	Notes	Status
	GO:0005737	cytoplasm	C	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0006012	galactose metabolic process	P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0009242	colanic acid biosynthetic process	P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016052	carbohydrate catabolic process	P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0009435	NAD biosynthetic process	P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0009269	response to desiccation	P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0042280	cell surface antigen activity, host-interacting	F	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0030113	capsule (sensu Bacteria)	C	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions

Partner Type	Partner	Notes
Protein	Subunits of UDP-glucose 4-epimerase	could be indirect
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MRVLVTGGSG YIGSHTCVQL LQNGHDVIIL DNLCNSKRSV LPVIERLGGK HPTFVEGDIR NEALMTEILH DHAIDTVIHF AGLKAVGESV QKPLEYYDNN VNGTLRLISA MRAANVKNFI FSSSATVYGD QPKIPYVESF PTGTPQSPYG KSKLMVEQIL TDLQKAQPDW SIALLRYFNP VGAHPSGDMG EDPQGIPNNL MPYIAQVAVG RRDSLAIFGN DYPTEDGTGV RDYIHVMDLA DGHVVAMEKL ANKPGVHIYN LGAGVGNSVL DVVNAFSKAC GKPVNYHFAP RREGDLPAYW ADASKADREL NWRVTRTLDE MAQDTWHWQS RHPQGYPD
Mol. Wt	37.27 kDa (calc) ^[2]
pI	6.28^[2]
Extinction coefficient	48360 - 48735 (calc based on 14 Y, 5 W, and 3 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession
X-RAY DIFFRACTION	Escherichia coli	2UDP UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
X-RAY DIFFRACTION	Escherichia coli	1XEL UDP-GALACTOSE 4-EPIMERASE FROM ESCHERICHIA COLI
X-RAY DIFFRACTION	Escherichia coli	1UDC STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-MANNOSE
X-RAY DIFFRACTION	Escherichia coli	1UDB STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GLUCOSE
X-RAY DIFFRACTION	Escherichia coli	1UDA STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE
X-RAY DIFFRACTION	Escherichia coli	1NAI UDP-GALACTOSE 4-EPIMERASE FROM ESCHERICHIA COLI, OXIDIZED
X-RAY DIFFRACTION	Escherichia coli	1NAH UDP-GALACTOSE 4-EPIMERASE FROM ESCHERICHIA COLI, REDUCED
X-RAY DIFFRACTION	Escherichia coli	1LRL Crystal Structure of UDP-Galactose 4-Epimerase Mutant Y299C Complexed with UDP-Glucose
X-RAY DIFFRACTION	Escherichia coli	1LRK Crystal Structure of Escherichia coli UDP-Galactose 4-Epimerase Mutant Y299C Complexed with UDP-N-acetylglucosamine
X-RAY DIFFRACTION	Escherichia coli	1LRJ Crystal Structure of E. coli UDP-Galactose 4-Epimerase Complexed with UDP-N-Acetylglucosamine
X-RAY DIFFRACTION	Escherichia coli	1KVU UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
X-RAY DIFFRACTION	Escherichia coli	1KVT UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
X-RAY DIFFRACTION	Escherichia coli	1KVS UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
X-RAY DIFFRACTION	Escherichia coli	1KVR UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
X-RAY DIFFRACTION	Escherichia coli	1KVQ UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL
X-RAY DIFFRACTION	Escherichia coli	1A9Z UDP-GALACTOSE 4-EPIMERASE MUTANT S124A/Y149F COMPLEXED WITH UDP-GALACTOSE
X-RAY DIFFRACTION	Escherichia coli	1A9Y UDP-GALACTOSE 4-EPIMERASE MUTANT S124A/Y149F COMPLEXED WITH UDP-GLUCOSE
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:UDPGLUCEPIM-MONOMER
UniProt (EcoliWiki Page)	UniProt:P09147
PFAM (EcoliWiki Page)	PFAM:PF01370
RefSeq (EcoliWiki Page)	RefSeq:NP_415280
ModBase (EcoliWiki Page)	ModBase:P09147
PDB (EcoliWiki Page)	PDB:1A9Y
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 ^3.8 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 ^3.8 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

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[2]

[3]

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 |{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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 ==Nomenclature==
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 !{{table heading style}} |Synonyms
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-UDP-galactose-4-epimerase<ref name='LIB:Riley_2006'/>, B0759<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GalD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GalE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
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 !{{table heading style}} |Product description
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-UDP-glucose 4-epimerase monomer<ref name='LIB:EcoCyc10.6'/>; UDP-glucose 4-epimerase monomer<ref name='LIB:EcoCyc11.1'/>; Component of [[:Category:Complex:UDP-glucose 4-epimerase|UDP-glucose 4-epimerase]]<ref name='LIB:EcoCyc10.6'/>; UDP-glucose 4-epimerase<ref name='LIB:EcoCyc10.6'/>; UDP-glucose 4-epimerase<ref name='LIB:EcoCyc11.1'/>
+UDP-glucose 4-epimerase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+Component of ; [[:Category:Complex:UDP-glucose 4-epimerase|UDP-glucose 4-epimerase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
 |-
 !{{table heading style}} |EC number (for enzymes)
 |
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 ==Function==
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 ==Gene Product Resources==
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 ==References==
+{{BacktoTop}}
 {{RefHelp}}
 <references/>
 __NOTOC__
-[[Category:GO:0005737]][[Category:GO:0006012]][[Category:GO:0009242]][[Category:GO:0016052]][[Category:GO:0009435]][[Category:GO:0009269]][[Category:GO:0042280]][[Category:GO:0030113]][[Category:Complex:UDP-glucose 4-epimerase]]</noinclude>
+</noinclude>

galE:Gene Product(s): Difference between revisions

Revision as of 08:39, 28 July 2007

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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