fabI:Gene: Difference between revisions

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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=255 Genobase]
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=255 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:E14F6|E14F6]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=256 Genobase]
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PMID:3038334  
PMID:3038334  
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est. P1 cotransduction: 47% <ref name='LIB:Nichols_linked_Tn'/> <br />  
est. P1 cotransduction: 47% <ref name='LIB:Nichols_linked_Tn'/> <br />  
Synonyms:zci-233::Tn10  
Synonyms:zci-233::Tn10  
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[[:Category:Kohara_Phage:E14F6|E14F6]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=256 Genobase]
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PMID:3038334


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11528 EcoCyc:EG11528]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1490 EchoBASE:EB1490]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
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[http://chase.ou.edu/macro/searchlink.php?bnum=b1288 EcoliGenExpDB:b1288]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C1759 ECOL199310CYC:C1759]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG11528 EcoGene:EG11528]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
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[http://BioCyc.org/ECOO157/new-image?object=FABI ECOO157CYC:FABI]
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/812 CGSC:812]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0004327&formSubmitReturn=1 ASAP:ABE-0004327]
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Revision as of 20:01, 21 September 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

fabI

Mnemonic

Fatty acid biosynthesis

Synonyms

ECK1283, b1288, JW1281, envM, gts, qmeA, G482[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

29.06 minutes 

MG1655: 1349063..1348275
<gbrowseImage> name=NC_000913:1348275..1349063 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1349408..1348620
<gbrowseImage> name=NC_012967:1348620..1349408 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1239124..1239912
<gbrowseImage> name=NC_012759:1239124..1239912 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1352753..1351965
<gbrowseImage> name=AC_000091:1351965..1352753 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1438459..1437671
<gbrowseImage> name=NC_010473:1437671..1438459 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1348278

Edman degradation

PMID:1364817[3]
PMID:8119879[4]
PMID:9298646[5]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

fabIG93S

G93S

Diazaborine resistance

seeded from UniProt:P0AEK4

fabIS241F

S241F

Produces temperature-sensitive phenotype

seeded from UniProt:P0AEK4

fabI392(ts)

temperature sensitive

CGSC:7550


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1281

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCGGTTTTCTTTCCGGTAAGCG

Primer 2:CCTTTCAGTTCGAGTTCGTTCAT

18B6

Kohara Phage

Genobase

PMID:3038334[7]

E14F6

Kohara Phage

Genobase

PMID:3038334[7]

trpC83::Tn10

Linked marker

CAG18455 = CGSC7371[8]

est. P1 cotransduction: 30% [9]
Synonyms:trpB83::Tn10

zcj-233::Tn10

Linked marker

CAG12028 = CGSC7373[8]

est. P1 cotransduction: 47% [9]
Synonyms:zci-233::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Bergler, H et al. (1992) Sequences of the envM gene and of two mutated alleles in Escherichia coli. J. Gen. Microbiol. 138 2093-100 PubMed
  4. ↑ Bergler, H et al. (1994) Protein EnvM is the NADH-dependent enoyl-ACP reductase (FabI) of Escherichia coli. J. Biol. Chem. 269 5493-6 PubMed
  5. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  8. ↑ 8.0 8.1 CGSC: The Coli Genetics Stock Center
  9. ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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