arcA:Gene: Difference between revisions

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Primer 2:CCATCTTCCAGATCACCGCAGAA  
Primer 2:CCATCTTCCAGATCACCGCAGAA  
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[[:Category:Kohara_Phage:12A4|12A4]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=675 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:12A4|12A4]]
[[:Category:Kohara_Phage:15A5|15A5]]
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Kohara Phage
Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=675 Genobase]
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=676 Genobase]
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PMID:3038334  
PMID:3038334  

Revision as of 21:50, 2 September 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

arcA

Mnemonic

Aerobic respiration control

Synonyms

ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

99.96 minutes 

MG1655: 4638329..4637613
<gbrowseImage> name=NC_000913:4637613..4638329 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4628466..4627750
<gbrowseImage> name=NC_012967:4627750..4628466 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4576097..4576813
<gbrowseImage> name=NC_012759:4576097..4576813 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4644986..4644270
<gbrowseImage> name=AC_000091:4644270..4644986 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4684791..4684075
<gbrowseImage> name=NC_010473:4684075..4684791 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4637613

Edman degradation

PMID:9298646[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔarcA (Keio:JW4364)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC11117[4]

ΔarcA43

CGSC:78398

ΔarcA45

CGSC:79752

ΔarcA44::kan

CGSC:90811

ΔarcA726::kan

PMID:16738554[3]

CGSC:100034

arcA

mutation

mutation

represses aerobic function

PMID:2565334[5]


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW4364

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCCAGACCCCGCACATTCTTAT

Primer 2:CCATCTTCCAGATCACCGCAGAA

12A4

Kohara Phage

Genobase

PMID:3038334[7]

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[4]

est. P1 cotransduction: 14% [8]
Synonyms:zjj-202::Tn10, zji-202::Tn10

thrA34::Tn10

Linked marker

CAG18442 = CGSC7320[4]

est. P1 cotransduction: 93% [8]
Synonyms:thr-34::Tn10

15A5

Kohara Phage

Genobase

PMID:3038334[7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10061

EchoBASE (EcoliWiki Page)

EchoBASE:EB0059

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4401

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C5488

EcoGene (EcoliWiki Page)

EcoGene:EG10061

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:ARCA

CGSC (EcoliWiki Page)

CGSC:831

ASAP (EcoliWikiPage)

ASAP:ABE-0014434


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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Iuchi, S et al. (1989) Differentiation of arcA, arcB, and cpxA mutant phenotypes of Escherichia coli by sex pilus formation and enzyme regulation. J. Bacteriol. 171 2889-93 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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