preT:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
updating gene-centric page tabs
No edit summary
Line 9: Line 9:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}  
<noinclude>{{TabsTop}}  
{{Tab|Quickview|preB}}{{Tab On|Gene|preB}}{{Tab|Gene Product(s)|preB}}{{Tab|Expression|preB}}{{Tab|Evolution|preB}}{{Tab|On One Page|preB}}{{TabsBottom}}
{{Tab|Quickview|yeiT}}{{Tab On|Gene|yeiT}}{{Tab|Gene Product(s)|yeiT}}{{Tab|Expression|yeiT}}{{Tab|Evolution|yeiT}}{{Tab|On One Page|yeiT}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 38: Line 38:
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''yeiT''
''preB''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
Line 46: Line 46:
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK2139, b2146, JW2133''<ref name='LIB:Riley_2006'/>
''ECK2139, b2146, JW2133''<ref name='LIB:Riley_2006'/>, yeiT''


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 21:19, 30 July 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

preB

Mnemonic

Systematic nomenclature

Synonyms

ECK2139, b2146, JW2133[1], yeiT

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

48.11 minutes 

MG1655: 2232055..2233293
<gbrowseImage> name=NC_000913:2232055..2233293 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2185271..2186509
<gbrowseImage> name=NC_012967:2185271..2186509 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2124538..2125776
<gbrowseImage> name=NC_012759:2124538..2125776 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2237367..2238605
<gbrowseImage> name=AC_000091:2237367..2238605 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2323063..2324301
<gbrowseImage> name=NC_010473:2323063..2324301 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2232055

Edman degradation

PMID:18482579[2]


edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyeiT (Keio:JW2133)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC9729[4]

ΔyeiT773::kan

PMID:16738554[3]

CGSC:104590


edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2133

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCCCGCAACAAAATTATCTGGA

Primer 2:CCACATGAGCAAGCTCCCTCTAA

zbd-3104::Tn10

Linked marker

CAG12021 = CGSC7344[4]

est. P1 cotransduction: 6% [6]
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10

napA722::Tn10

Linked marker

CAG12098 = CGSC7400[4]

est. P1 cotransduction: 2% [6]
Synonyms:zeg-722, zei-722::Tn10

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7145

EchoBASE (EcoliWiki Page)

EchoBASE:EB3827

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2146

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2679

EcoGene (EcoliWiki Page)

EcoGene:EG14074

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z3401

ASAP (EcoliWikiPage)

ASAP:ABE-0007096


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Mihara, H et al. (2008) The iscS gene deficiency affects the expression of pyrimidine metabolism genes. Biochem. Biophys. Res. Commun. 372 407-11 PubMed
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=preT:Gene&oldid=1281995"