prmC:Gene: Difference between revisions

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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12424 EcoCyc]
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Revision as of 21:33, 26 July 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

prmC

Mnemonic

Protein methylation

Synonyms

ECK1200, b1212, JW1203, hemK[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

27.27 minutes 

MG1655: 1265317..1266150
<gbrowseImage> name=NC_000913:1265317..1266150 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1266244..1267077
<gbrowseImage> name=NC_012967:1266244..1267077 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1154038..1154871
<gbrowseImage> name=NC_012759:1154038..1154871 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1267671..1268504
<gbrowseImage> name=AC_000091:1267671..1268504 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1305558..1306391
<gbrowseImage> name=NC_010473:1305558..1306391 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1203

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCGAATATCAACACTGGTTACG

Primer 2:CCTTGATAATAGCGGCCGAGCGT

fadR13::Tn10

Linked marker

CAG18497 = CGSC7365[3]

est. P1 cotransduction: 29% [4]

oppC506::Tn10

Linked marker

CAG12169 = CGSC7369[3]

est. P1 cotransduction: 20% [4]
Synonyms:zch-506::Tn10, zci-506::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12424

EchoBASE (EcoliWiki Page)

EchoBASE:EB2323

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1212

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1670

EcoGene (EcoliWiki Page)

EcoGene:EG12424

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:HEMK

CGSC (EcoliWiki Page)

CGSC:36992

ASAP (EcoliWikiPage)

ASAP:ABE-0004068


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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