rpsL:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
touch the Product_motif_table table.
No edit summary
Line 35: Line 35:
*  
*  
****************************************************************************************** -->{{Product_nomenclature_help}}
****************************************************************************************** -->{{Product_nomenclature_help}}
{| id="Z46aae31fd1d7a"  class=" tableEdit Product_nomenclature_table"   
{|   id="Z46aae31fd1d7a"  class=" tableEdit Product_nomenclature_table"   


|-
|-
Line 80: Line 80:
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
|
GO:0046677
|
response to antibiotic
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0046
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0030529
|
ribonucleoprotein complex
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0687
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0019843
|
rRNA binding
|
GO_REF:0000004<br />GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0699<br />HAMAP:MF_00403
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
GO:0015935
|
small ribosomal subunit
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005679
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0006412
|
translation
|
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005679<br />InterPro:IPR006032<br />HAMAP:MF_00403
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
GO:0005840
|
ribosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006032
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
GO:0003735
|
structural constituent of ribosome
|
GO_REF:0000002<br />GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005679<br />InterPro:IPR006032
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
GO:0003723
|
RNA binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0694
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
GO:0000049
|
tRNA binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0820
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0022626
|
cytosolic ribosome
|
|
|
|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required field missing
|-
|
|
GO:0000372
|
Group I intron splicing
|
PMID:7958841
|
IDA: Inferred from Direct Assay
|
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0033120
|
positive regulation of RNA splicing
|
PMID:7958841
|
IDA: Inferred from Direct Assay
|
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0034336
|
misfolded RNA binding
|
PMID:7958841
|
IDA: Inferred from Direct Assay
|
|
F
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0034337
|
RNA folding
|
PMID:7958841
|
IDA: Inferred from Direct Assay
|
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|
GO:0006412
|
translation
|
PMID:4579428
|
IDA: Inferred from Direct Assay
|
|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
Data in Table IV.
|
complete
|-
|
|
GO:0003735
|
structural constituent of ribosome
|
PMID:4587209
|
IDA: Inferred from Direct Assay
|
|
F
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
complete
|-
|
|
GO:0005737
|
cytoplasm
|
|
|
|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing 
|-  
|-  
|
|
Line 626: Line 302:
*  
*  
****************************************************************************************** -->{{Product_physical_properties_help}}
****************************************************************************************** -->{{Product_physical_properties_help}}
{| id="A46aae33912db1"  class=" tableEdit Product_phys_prop_table"   
{|   id="A46aae33912db1"  class=" tableEdit Product_phys_prop_table"   


|-
|-
Line 702: Line 378:
*  
*  
****************************************************************************************** -->{{Product_structure_help}}
****************************************************************************************** -->{{Product_structure_help}}
{| id="I46a87434558a6"  class=" tableEdit Product_structure_table"   
{|   id="I46a87434558a6"  class=" tableEdit Product_structure_table"   


|-
|-

Revision as of 21:59, 10 June 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpsL

Synonyms

30S ribosomal subunit protein S12[1], B3342[2][1], StrA[2][1], AsuB[2][1], RpsL[2][1]

Product description

30S ribosomal subunit protein S12[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S12; RNA chaperone[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0022627

cytosolic small ribosomal subunit

PMID:4587209[5]

IDA: Inferred from Direct Assay

C

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 30S ribosomal subunit

could be indirect

Protein

ycgL

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

hns

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

yedI

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

rplO

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

rplA

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

rpsI

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

rpsD

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

cspI

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

yedN

PMID:16606699[6]

Experiment(s):EBI-1145610

Protein

Subunits of ribosome

could be indirect


edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

cytoplasm

From EcoCyc[3]


edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MATVNQLVRK PRARKVAKSN VPALEACPQK RGVCTRVYTT TPKKPNSALR KVCRVRLTNG
FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTVRG ALDCSGVKDR KQARSKYGVK RPKA
Length

124

Mol. Wt

13.736 kDa

pI

11.3 (calculated)

Extinction coefficient

5,960 - 6,460 (calc based on 4 Y, W, and 4 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A7S3


edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpsL taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10911-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7S3

PFAM (EcoliWiki Page)

PFAM:PF00164

RefSeq (EcoliWiki Page)

RefSeq:NP_417801


edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Wittmann-Liebold, B (1973) Studies on the primary structure of 20 proteins from Escherichia coli ribosomes by means of an improved protein sequenator. FEBS Lett. 36 247-9 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rpsL:Gene_Product(s)&oldid=1097269"