grpE:Gene: Difference between revisions
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|{{Sub}}[[#Nomenclature |Nomenclature]] | |{{Sub}}[[#Nomenclature |Nomenclature]] | ||
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]] | |{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]] | ||
|{{Sub}}[[#Sequence Features|Sequence Features]] | |||
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]] | |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]] | ||
|{{Sub}}[[#Genetic Resources |Genetic Resources]] | |{{Sub}}[[#Genetic Resources |Genetic Resources]] | ||
Revision as of 23:02, 10 May 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
grpE |
|---|---|
| Mnemonic |
Growth after phage induction |
| Synonyms |
ECK2610, b2614, JW2594[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
59.23 minutes |
MG1655: 2748730..2748137 |
||
|
NC_012967: 2672003..2671410 |
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|
NC_012759: 2633949..2634542 |
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|
W3110 |
|
W3110: 2749364..2748771 |
||
|
DH10B: 2840495..2839902 |
||||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
grpEV108A |
V108A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEG122D |
G122D |
Temperature-sensitive phenotype |
seeded from UniProt:P09372 | ||||
|
grpEL149A |
L149A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEQ155A |
Q155A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEI157A |
I157A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEM159A |
M159A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEM174A |
M174A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpER183A |
R183A |
Loss of ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpER186A |
R186A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEM189A |
M189A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEV192A |
V192A |
Loss of ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpER74A |
R74A |
Great decrease in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEP151A |
P151A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpER73A |
R73A |
Great decrease in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEK82A |
K82A |
Great decrease in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEF86A |
F86A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpER104A |
R104A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpEE107A |
E107A |
No effect in ability to interact with dnaK |
seeded from UniProt:P09372 | ||||
|
grpE280 |
| ||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW2594 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGTAGTAAAGAACAGAAAAC Primer 2:CCAGCTTTTGCTTTCGCTACAG | |
|
Linked marker |
est. P1 cotransduction: 69% [5] | ||
|
Linked marker |
est. P1 cotransduction: % [5] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Ang, D et al. (1986) Escherichia coli grpE gene codes for heat shock protein B25.3, essential for both lambda DNA replication at all temperatures and host growth at high temperature. J. Bacteriol. 167 25-9 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).