atpB:Gene: Difference between revisions

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!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


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Revision as of 22:19, 10 May 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

atpB

Mnemonic

ATP

Synonyms

ECK3731, b3738, JW3716, papD, uncB[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

84.47 minutes 

MG1655: 3920074..3919259
gbrowse_img.php?coord=3919259..3920074&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3882417..3881602
gbrowse_img.php?coord=3881602..3882417&genome=REL606&name=NC_012967&trackset=0&width=300&.png

BW2952

NC_012759: 3807592..3808407
gbrowse_img.php?coord=3807592..3808407&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

W3110

 

W3110: 3714630..3715445
gbrowse_img.php?coord=3714630..3715445&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 4017658..4016843
gbrowse_img.php?coord=4016843..4017658&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

atpBS206L

S206L

Reduced activity

seeded from UniProt:P0AB98

atpBL207Y,F

L207Y,F

No change in activity

seeded from UniProt:P0AB98

atpBR210K,I,V,E

R210K,I,V,E

Completely defective

seeded from UniProt:P0AB98

atpBA217R

A217R

Completely defective

seeded from UniProt:P0AB98

atpBH245Y

H245Y

Reduced activity

seeded from UniProt:P0AB98

atpBA217H

A217H

Reduced activity

seeded from UniProt:P0AB98

atpBN214V

N214V

Reduced activity

seeded from UniProt:P0AB98

atpBN214H

N214H

Completely defective

seeded from UniProt:P0AB98

ΔatpB (Keio:JW3716)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC10717[3]

atpB402

CGSC:7158

ΔatpB767::kan

PMID:16738554[2]

CGSC:100136


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3716

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCGCTTCAGAAAATATGACGCC

Primer 2:CCATGTTCTTCAGACGCCATCGA

zid-501::Tn10

Linked marker

CAG18499 = CGSC7458[3]

est. P1 cotransduction: 14% [5]

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[3]

est. P1 cotransduction: 70% [5]
Synonyms:zie-296::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10099

EchoBASE (EcoliWiki Page)

EchoBASE:EB0097

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3738

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4666

EcoGene (EcoliWiki Page)

EcoGene:EG10099

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:ATPB

CGSC (EcoliWiki Page)

CGSC:32

ASAP (EcoliWikiPage)

ASAP:ABE-0012222


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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