yffL:Gene: Difference between revisions

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Automated update of mnemonics from EcoGene.
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!align=left |Standard name
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''yffL''  
''yffL''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Systematic nomenclature
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK2438, b2443, unique to MG1655''<ref name='LIB:Riley_2006'/>
''ECK2438, b2443, unique to MG1655''<ref name='LIB:Riley_2006'/>
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{|  id="A46a9de282d692"  class=" tableEdit Gene_location_table"   
{|  id="A46a9de282d692"  class=" tableEdit Gene_location_table"   
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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{|  id="F46a9de287d3b9"  class=" tableEdit Gene_sequence_features_table"   
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!|Feature type!!Location!!Description
!|Feature type!!Location!!Description


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{| {{Prettytable}}  id="K46a9de28c2e09"  class=" tableEdit Gene_allele_table dataTable"   
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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!|Resource!!Resource Type!!Source!!Notes/Reference
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{|  id="I46a9de2a1c972"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
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[[Category:Gene List:Eut/CPZ-55 prophage]]
[[Category:Gene List:Eut/CPZ-55 prophage]]
[[Category:yff genes]][[Category:Gene_List:DH10B]]
[[Category:yff genes]][[Category:Gene_List:DH10B]]
[[Category:y genes]]

Revision as of 22:07, 25 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yffL

Mnemonic

Systematic nomenclature

Synonyms

ECK2438, b2443, unique to MG1655[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

55.14 minutes 

MG1655: 2558279..2558920
gbrowse_img.php?coord=2558279..2558920&genome=ecoli&name=MG1655&trackset=0&width=300&.png

DH10B

DH10B: 2650044..2650685
gbrowse_img.php?coord=2650044..2650685&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[2]

Status:

Primer 1:

Primer 2:

nupC510::Tn10

Linked marker

CAG18468 = CGSC7410[3]

est. P1 cotransduction: 11% [4]

purC80::Tn10

Linked marker

CAG18470 = CGSC7413[3]

est. P1 cotransduction: 24% [4]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7273

EchoBASE (EcoliWiki Page)

EchoBASE:EB3925

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2443

EcoGene (EcoliWiki Page)

EcoGene:EG14173

ASAP (EcoliWikiPage)

ASAP:ABE-0008055


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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