hsdR:Gene: Difference between revisions
imported>Wikientrybot No edit summary |
imported>Wikientrybot Move help links into the <above> tag inside templates. |
||
| Line 50: | Line 50: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.J46aa0d4642024--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.J46aa0d4642024--> | ||
<!--Nomenclature_notes--></protect> | <!--Nomenclature_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
| Line 98: | Line 98: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.G46aa0d46c6c6b--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.G46aa0d46c6c6b--> | ||
<!--Location_notes--></protect> | <!--Location_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
| Line 120: | Line 120: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.Z46aa0d4790898--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.Z46aa0d4790898--> | ||
<protect><!--Sequence_notes--></protect> | <protect><!--Sequence_notes--></protect> | ||
====Notes==== | ====Notes==== | ||
| Line 411: | Line 411: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.D46aa0d47dca5e--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.D46aa0d47dca5e--> | ||
<protect><!--Alleles_notes--></protect> | <protect><!--Alleles_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
| Line 467: | Line 467: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.P46aa0d48a62f1--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.P46aa0d48a62f1--> | ||
<protect><!--Gene_resources_notes--></protect> | <protect><!--Gene_resources_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
| Line 545: | Line 545: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.F46aa0d4955d6d--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.F46aa0d4955d6d--> | ||
<protect><!--Gene_accessions_notes--></protect> | <protect><!--Gene_accessions_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
| Line 567: | Line 567: | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.19251.Y46a7259173119--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.19251.Y46a7259173119--> | ||
<noinclude><protect> | <noinclude><protect> | ||
==References== | ==References== | ||
{{BacktoTop}} | {{BacktoTop}} | ||
<references/> | <references/> | ||
__NOTOC__ | __NOTOC__ | ||
Revision as of 03:31, 6 February 2009
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
hsdR |
|---|---|
| Mnemonic | |
| Synonyms |
ECK4340, b4350, JW4313, Hs, hsp, hsr, rm[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
98.74 minutes |
MG1655: 4584838..4581272 |
||
|
W3110 |
|
W3110: 4591495..4587929 |
||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔhsdR (Keio:JW4313) |
deletion |
deletion |
PMID:16738554[2] | ||||
|
hsdRΔ4 |
deletion |
deletion |
Lacks DNA specifying six DEAD-box motifs that are critical for helicase activity |
PMID:9776741[4] | |||
|
hsdR514 |
|||||||
|
hsdR2 |
|||||||
|
hsdR4 |
|||||||
|
hsdR17 |
|||||||
|
hsdR19 |
|||||||
|
hsdR0 |
|||||||
|
ΔhsdR24 |
|||||||
|
hsdR11 |
|||||||
|
hsdR27 |
|||||||
|
hsdR18 |
|||||||
|
hsdR519 |
|||||||
|
hsdR13 |
|||||||
|
hsdR29 |
|||||||
|
ΔhsdR748::kan |
PMID:16738554[2] |
| |||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW4313 |
Plasmid clone |
PMID:16769691[5]
Status:Clone OK Primer 1:GCCTTATGGGCgTTAAATATTTGGACAGGCCCG Primer 2:CCGGCCAGCTCGTCCCAGATATA | |
|
Linked marker |
est. P1 cotransduction: % [6] | ||
|
Linked marker |
est. P1 cotransduction: 66% [6] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Davies, GP et al. (1998) EcoKI with an amino acid substitution in any one of seven DEAD-box motifs has impaired ATPase and endonuclease activities. Nucleic Acids Res. 26 4828-36 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).