parC:Gene Product(s): Difference between revisions

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Collapsing IEA rows.
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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
ParC product  
ParC product  
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
|
||
DNA topoisomerase IV, subunit A product<ref name='LIB:Riley_2006'/>, B3019 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA topoisomerase IV, subunit A product<ref name='LIB:Riley_2006'/>, B3019 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ParC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
|
||
topoisomerase IV subunit A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
topoisomerase IV subunit A<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  


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|-
|-
!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
|
||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.- 5.99.1.-]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.- 5.99.1.-]<ref name='LIB:Riley_2006'/>
|-
 
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|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002205
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005742
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006691
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013757
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013758
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013760
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
|
DNA binding
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0238
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003916_!_DNA_topoisomerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003916_!_DNA_topoisomerase_activity GO:0003916]
|
DNA topoisomerase activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006691
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003916_!_DNA_topoisomerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003916_!_DNA_topoisomerase_activity GO:0003916]
|
DNA topoisomerase activity
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0799
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity GO:0003918]
|
DNA topoisomerase (ATP-hydrolyzing) activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002205
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity GO:0003918]
|
DNA topoisomerase (ATP-hydrolyzing) activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005742
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity GO:0003918]
|
DNA topoisomerase (ATP-hydrolyzing) activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013757
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity GO:0003918]
|
DNA topoisomerase (ATP-hydrolyzing) activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013758
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003918_!_DNA_topoisomerase_(ATP-hydrolyzing)_activity GO:0003918]
|
DNA topoisomerase (ATP-hydrolyzing) activity
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013760
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
|
ATP binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002205
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
|
ATP binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005742
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
|
ATP binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006691
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
|
ATP binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013757
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
|
ATP binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013758
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
|
ATP binding
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013760
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005694_!_chromosome]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005694_!_chromosome GO:0005694]
|
chromosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002205
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005694_!_chromosome]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005694_!_chromosome GO:0005694]
|
chromosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005742
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005694_!_chromosome]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005694_!_chromosome GO:0005694]
|
chromosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006691
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005694_!_chromosome]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005694_!_chromosome GO:0005694]
|
chromosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013757
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005694_!_chromosome]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005694_!_chromosome GO:0005694]
|
chromosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013758
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0005694_!_chromosome]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005694_!_chromosome GO:0005694]
|
chromosome
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013760
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006265_!_DNA_topological_change]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006265_!_DNA_topological_change GO:0006265]
|
DNA topological change
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR002205
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006265_!_DNA_topological_change]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006265_!_DNA_topological_change GO:0006265]
|
DNA topological change
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005742
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006265_!_DNA_topological_change]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006265_!_DNA_topological_change GO:0006265]
|
DNA topological change
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006691
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006265_!_DNA_topological_change]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006265_!_DNA_topological_change GO:0006265]
|
DNA topological change
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013757
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006265_!_DNA_topological_change]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006265_!_DNA_topological_change GO:0006265]
|
DNA topological change
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013758
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006265_!_DNA_topological_change]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006265_!_DNA_topological_change GO:0006265]
|
DNA topological change
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR013760
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006268_!_DNA_unwinding_during_replication]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006268_!_DNA_unwinding_during_replication GO:0006268]
|
DNA unwinding during replication
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR005742
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0006268_!_DNA_unwinding_during_replication]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006268_!_DNA_unwinding_during_replication GO:0006268]
|
DNA unwinding during replication
|
GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR006691
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|
[[Category:GO:0016020_!_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016020_!_membrane GO:0016020]
|
membrane
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0472
|
C
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-  
|-  
|
|
Line 799: Line 136:
|
|
required field missing  
required field missing  
|-
|
|
[[Category:GO:0016853_!_isomerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016853_!_isomerase_activity GO:0016853]
|
isomerase activity
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0413
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete


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!Partner Type!!Partner!!Notes
!|Partner Type!!Partner!!Notes
|-
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Protein
Protein
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could be indirect   
could be indirect   
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Protein
Protein
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could be indirect   
could be indirect   
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Notes
|-
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cytoplasm
cytoplasm
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From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
From EcoCyc<ref name='LIB:EcoCyc11.1'/>   
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|-
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
|
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG10686-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG10686-MONOMER at EcoCyc]  
<pre>MSDMAERLAL HEFTENAYLN YSMYVIMDRA LPFIGDGLKP VQRRIVYAMS ELGLNASAKF
<pre>MSDMAERLAL HEFTENAYLN YSMYVIMDRA LPFIGDGLKP VQRRIVYAMS ELGLNASAKF
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RGRRGTLMRG LQRIDRVEID SPRRASSGDS EE</pre>  
RGRRGTLMRG LQRIDRVEID SPRRASSGDS EE</pre>  
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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83.83 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
83.83 kDa (calc) <ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |pI
|
||
   
   
|-
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!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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55810 - 56060 (calc based on 19 Y, 5 W, and 2 C residues)  
55810 - 56060 (calc based on 19 Y, 5 W, and 2 C residues)  
|-
 
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10686-MONOMER EcoCyc:EG10686-MONOMER]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10686-MONOMER EcoCyc:EG10686-MONOMER]
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[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])  
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])  
|
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[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0AFI2 SwissModel:P0AFI2]
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0AFI2 SwissModel:P0AFI2]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
|
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[[uniprot:P0AFI2|UniProt:P0AFI2]]
[[uniprot:P0AFI2|UniProt:P0AFI2]]
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://pfam.sanger.ac.uk/family?acc=PF00521 PFAM:PF00521]
[http://pfam.sanger.ac.uk/family?acc=PF00521 PFAM:PF00521]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417491 RefSeq:NP_417491]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417491 RefSeq:NP_417491]
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[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])  
|
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[http://salilab.org/modbase/searchbyid?databaseID=P0AFI2 ModBase:P0AFI2]
[http://salilab.org/modbase/searchbyid?databaseID=P0AFI2 ModBase:P0AFI2]
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|-
|-  
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[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])  
[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])  
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[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1ZVT PDB:1ZVT]
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1ZVT PDB:1ZVT]
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Revision as of 02:28, 15 November 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

ParC product

Synonyms

DNA topoisomerase IV, subunit A product[1], B3019 product[2][1], ParC product[2][1]

Product description

topoisomerase IV subunit A[2][3];

Component of ; dimer of topoisomerase IV subunit A[3]; topoisomerase IV[3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

PMID:12535532[4]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc 11.1[3].

complete

GO:0006261

DNA-dependent DNA replication

PMID:2170028[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc 11.1[3].

complete

GO:0003918

DNA topoisomerase (ATP-hydrolyzing) activity

IDA: Inferred from Direct Assay

F

required field missing

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Interactions

Partner Type Partner Notes

Protein

Subunits of dimer of topoisomerase IV subunit A

could be indirect

Protein

Subunits of topoisomerase IV

could be indirect

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes

cytoplasm

From EcoCyc[3]

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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MSDMAERLAL HEFTENAYLN YSMYVIMDRA LPFIGDGLKP VQRRIVYAMS ELGLNASAKF
KKSARTVGDV LGKYHPHGDS ACYEAMVLMA QPFSYRYPLV DGQGNWGAPD DPKSFAAMRY
TESRLSKYSE LLLSELGQGT ADWVPNFDGT LQEPKMLPAR LPNILLNGTT GIAVGMATDI
PPHNLREVAQ AAIALIDQPK TTLDQLLDIV QGPDYPTEAE IITSRAEIRK IYENGRGSVR
MRAVWKKEDG AVVISALPHQ VSGARVLEQI AAQMRNKKLP MVDDLRDESD HENPTRLVIV
PRSNRVDMDQ VMNHLFATTD LEKSYRINLN MIGLDGRPAV KNLLEILSEW LVFRRDTVRR
RLNYRLEKVL KRLHILEGLL VAFLNIDEVI EIIRNEDEPK PALMSRFGLT ETQAEAILEL
KLRHLAKLEE MKIRGEQSEL EKERDQLQGI LASERKMNNL LKKELQADAQ AYGDDRRSPL
QEREEAKAMS EHDMLPSEPV TIVLSQMGWV RSAKGHDIDA PGLNYKAGDS FKAAVKGKSN
QPVVFVDSTG RSYAIDPITL PSARGQGEPL TGKLTLPPGA TVDHMLMESD DQKLLMASDA
GYGFVCTFND LVARNRAGKA LITLPENAHV MPPVVIEDAS DMLLAITQAG RMLMFPVSDL
PQLSKGKGNK IINIPSAEAA RGEDGLAQLY VLPPQSTLTI HVGKRKIKLR PEELQKVTGE
RGRRGTLMRG LQRIDRVEID SPRRASSGDS EE
Mol. Wt

83.83 kDa (calc) [2]

pI
Extinction coefficient

55810 - 56060 (calc based on 19 Y, 5 W, and 2 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

<beststructure>parC 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10686-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AFI2

UniProt (EcoliWiki Page)

UniProt:P0AFI2

PFAM (EcoliWiki Page)

PFAM:PF00521

RefSeq (EcoliWiki Page)

RefSeq:NP_417491

ModBase (EcoliWiki Page)

ModBase:P0AFI2

PDB (EcoliWiki Page)

PDB:1ZVT


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See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Espeli, O et al. (2003) Temporal regulation of topoisomerase IV activity in E. coli. Mol. Cell 11 189-201 PubMed
  5. ↑ Kato, J et al. (1990) New topoisomerase essential for chromosome segregation in E. coli. Cell 63 393-404 PubMed


Categories

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