gltA:Gene Product(s): Difference between revisions

Standard name	GltA product
Synonyms	citrate synthase product^[1], B0720 product^[2]^[1], IcdB product^[2]^[1], GltA product^[2]^[1]
Product description	citrate synthase monomer^[2]^[3]
EC number (for enzymes)	2.3.3.1^[1]
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Notes

Function

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Gene Ontology

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic_activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0021	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0004108	citrate_(Si)-synthase_activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010953	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0004108	citrate_(Si)-synthase_activity	GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.3.3.1	F	Seeded from EcoCyc 12.5 ^[4]
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0006099	tricarboxylic acid cycle	PMID:13152052^[5]	IDA: Inferred from Direct Assay		P	Seeded from EcoCyc 11.1^[3].	complete
	GO:0009061	anaerobic respiration				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0003878	ATP citrate synthase activity				F		required field missing
	GO:0005624	membrane_fraction	PMID:16858726^[6]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc 12.5 ^[4]
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MADTKAKLTL NGDTAVELDV LKGTLGQDVI DIRTLGSKGV FTFDPGFTST ASCESKITFI DGDEGILLHR GFPIDQLATD SNYLEVCYIL LNGEKPTQEQ YDEFKTTVTR HTMIHEQITR LFHAFRRDSH PMAVMCGITG ALAAFYHDSL DVNNPRHREI AAFRLLSKMP TMAAMCYKYS IGQPFVYPRN DLSYAGNFLN MMFSTPCEPY EVNPILERAM DRILILHADH EQNASTSTVR TAGSSGANPF ACIAAGIASL WGPAHGGANE AALKMLEEIS SVKHIPEFVR RAKDKNDSFR LMGFGHRVYK NYDPRATVMR ETCHEVLKEL GTKDDLLEVA MELENIALND PYFIEKKLYP NVDFYSGIIL KAMGIPSSMF TVIFAMARTV GWIAHWSEMH SDGMKIARPR QLYTGYEKRD FKSDIKR
Mol. Wt	48.01 kDa (calc) ^[2]
pI	6.62^[2]
Extinction coefficient	40340 - 41215 (calc based on 16 Y, 3 W, and 7 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structure Type	Organism	Accession
X-RAY DIFFRACTION	Escherichia coli	1OWC Three Dimensional Structure Analysis Of The R109L Variant of the Type II Citrate Synthase From E. Coli
X-RAY DIFFRACTION	Escherichia coli	1OWB Three Dimensional Structure Analysis Of The Variant R109L NADH Complex of Type II Citrate Synthase From E. Coli
X-RAY DIFFRACTION	Escherichia coli	1NXG The F383A variant of type II Citrate Synthase complexed with NADH
X-RAY DIFFRACTION	Escherichia coli	1NXE A Novel NADH Allosteric Regulator Site is Found on the Surface of the Hexameric Type II Phe383Ala Variant of Citrate Synthase
X-RAY DIFFRACTION	Escherichia coli	1K3P Three Dimensional Structure Analysis of the Type II Citrate Synthase from E.coli
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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:CITSYN-MONOMER
UniProt (EcoliWiki Page)	UniProt:P0ABH7
PFAM (EcoliWiki Page)	PFAM:PF00285
RefSeq (EcoliWiki Page)	RefSeq:NP_415248
ModBase (EcoliWiki Page)	ModBase:P0ABH7
PDB (EcoliWiki Page)	PDB:1K3P
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ SWIM, HE & KRAMPITZ, LO (1954) Acetic acid oxidation by Escherichia coli; evidence for the occurrence of a tricarboxylic acid cycle. J. Bacteriol. 67 419-25 PubMed
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed

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 InterPro:IPR010953
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+F
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+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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+|-
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+[[Category:GO:0004108_!_citrate_(Si)-synthase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004108_!_citrate_(Si)-synthase_activity GO:0004108]
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+citrate_(Si)-synthase_activity
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+[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000003 GO_REF:0000003]<br />
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+IEA: Inferred from Electronic Annotation
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+EC:2.3.3.1
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 F
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-[[Category:GO:0004108_!_citrate_(Si)-synthase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004108_!_citrate_(Si)-synthase_activity GO:0004108]
+[[Category:GO:0005624_!_membrane_fraction]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005624_!_membrane_fraction GO:0005624]
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-citrate_(Si)-synthase_activity
+membrane_fraction
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-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000003 GO_REF:0000003]<br />
+[[PMID:16858726]]<ref name=PMID:16858726/><br />
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-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
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-EC:2.3.3.1
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-F
+C
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 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>

gltA:Gene Product(s): Difference between revisions

Revision as of 01:13, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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gltA:Gene Product(s): Difference between revisions

Revision as of 01:13, 30 September 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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