cynX:Gene: Difference between revisions

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W3110: 359216..360370<br /><gbrowseImage>
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{{GBrowseLink|W3110|AC_000091|358216|361370|GBrowse(W3110)}}  
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{{GBrowseFastaLink|W3110|AC_000091|359216|360370|FASTA Dump}}  
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
[[RegulonDB]]
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[http://www.ncbi.nlm.nih.gov/gene?term=946770 GeneID:946770]
RegulonDB:ECK120000172
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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RegulonDB:ECK120000172
[http://www.ncbi.nlm.nih.gov/gene?term=946770 GeneID:946770]
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
Escherichia coli str. K-12 substr. MG1655  
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Latest revision as of 20:38, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

cynX

Mnemonic

Cyanase; cyanate metabolism

Synonyms

ECK0338, b0341, JW0332[1], JW0332

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

7.74 minutes 

MG1655: 359216..360370
<gbrowseImage> name=NC_000913:359216..360370 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 332548..333702
<gbrowseImage> name=NC_012967:332548..333702 source=REL606 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 359216..360370
<gbrowseImage> name=NC_007779:359216..360370 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1378752..1379906
<gbrowseImage> name=NC_010473:1378752..1379906 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

cynX(del) (Keio:JW0332)

deletion

deletion

PMID:16738554[2]

Shigen

CGSC8527[3]

cynX782(del)::kan

PMID:16738554[2]

CGSC:100470


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0332

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCCTGCTGGTACTGGTGCTGAT

Primer 2:CCTGCCTCTTTGACCCACAGCTG

10A6

Kohara Phage

Genobase

PMID:3038334[5]

proA81::Tn10

Linked marker

CAG18447 = CGSC7330[3]

est. P1 cotransduction: % [6]

lacI3042::Tn10

Linked marker

CAG18439 = CGSC7334[3]

est. P1 cotransduction: 78% [6]
Synonyms:lacI42::Tn10 nnnCAG18439 also carries lacZ118(0c) (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10177

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10177

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000172

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946770

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0174

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001175

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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