frdB:Gene: Difference between revisions
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Revision as of 19:58, 17 August 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
frdB |
|---|---|
| Mnemonic |
Fumarate reductase |
| Synonyms |
ECK4149, b4153, JW4114[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
94.36 minutes, 94.36 minutes |
MG1655: 4378540..4377806 |
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NC_012967: 4359228..4358494 |
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|
NC_012759: 4316541..4317275 |
||||
|
W3110 |
|
W3110: 4385197..4384463 |
||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
4377809 |
Edman degradation |
| ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Strain DH10B |
D51N |
Nonsynonomous mutation |
This is a SNP in E. coli K-12 Strain DH10B | ||||
|
ΔfrdB (Keio:JW4114) |
deletion |
deletion |
|||||
|
frdBC58S |
C58S |
Affects center 1 (2Fe-2S) |
seeded from UniProt:P0AC47 | ||||
|
frdBC78S |
C78S |
Affects center 1 (2Fe-2S) |
seeded from UniProt:P0AC47 | ||||
|
frdBC63S |
C63S |
Affects center 1 (2Fe-2S) |
seeded from UniProt:P0AC47 | ||||
|
frdBC66S |
C66S |
Affects center 1 (2Fe-2S) |
seeded from UniProt:P0AC47 | ||||
|
ΔfrdB780::kan |
| ||||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW4114 |
Plasmid clone |
Status:Clone OK Primer 1:GCCGCTGAGATGAAAAACCTGAA Primer 2:CCGCGTGGTTTCAGGGTCGCGAT | |
|
Linked marker |
est. P1 cotransduction: 46% [7] | ||
|
Linked marker |
est. P1 cotransduction: 11% [7] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Cole, ST et al. (1982) Location and nucleotide sequence of frdB, the gene coding for the iron-sulphur protein subunit of the fumarate reductase of Escherichia coli. Eur. J. Biochem. 126 211-6 PubMed
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
- ↑ 4.0 4.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).