ptrA:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
Convert to gbrowse_img.php extension.
Line 75: Line 75:
63.67 minutes 
63.67 minutes 
|
|
MG1655: 2956906..2954018<br />{{GBrowseFigureByCoord|2954018|2956906|ecoli|MG1655}}
MG1655: 2956906..2954018<br /><gbrowseImage>
name=NC_000913:2954018..2956906
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10786 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10786 EcoCyc]
Line 89: Line 94:


|
|
NC_012967: 2850615..2853503<br />{{GBrowseFigureByCoord|2850615|2853503|REL606|NC_012967}}
NC_012967: 2850615..2853503<br /><gbrowseImage>
name=NC_012967:2850615..2853503
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|REL606|NC_012967|2850615|2853503|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|2850615|2853503|GBrowse (REL606)}}
Line 100: Line 110:


|
|
NC_012759: 2841166..2844054<br />{{GBrowseFigureByCoord|2841166|2844054|BW2952|NC_012759}}
NC_012759: 2841166..2844054<br /><gbrowseImage>
name=NC_012759:2841166..2844054
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|BW2952|012759|2841166|NC_2844054|GBrowse (BW2952)}}
{{GBrowseLink|BW2952|012759|2841166|NC_2844054|GBrowse (BW2952)}}
Line 111: Line 126:
&nbsp;
&nbsp;
|
|
W3110: 2957540..2954652<br />{{GBrowseFigureByCoord|2954652|2957540|ecoli_W3110|W3110}}
W3110: 2957540..2954652<br /><gbrowseImage>
name=AC_000091:2954652..2957540
source=ecoli_W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|2953652|2958540|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|AC_000091|2953652|2958540|GBrowse(W3110)}}  
Line 122: Line 142:


|
|
DH10B: 3050776..3047888<br />{{GBrowseFigureByCoord|3047888|3050776|ecoli_DH10B|DH10B}}
DH10B: 3050776..3047888<br /><gbrowseImage>
name=NC_010473:3047888..3050776
source=ecoli_DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|3042112|3056552|GBrowse(DH10B)}}
{{GBrowseLink|ecoli_DH10B|NC_010473|3042112|3056552|GBrowse(DH10B)}}

Revision as of 21:35, 26 July 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ptrA

Mnemonic

Protease III

Synonyms

ptr, ECK2817, b2821, JW2789[1][2]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

63.67 minutes 

MG1655: 2956906..2954018
<gbrowseImage> name=NC_000913:2954018..2956906 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2850615..2853503
<gbrowseImage> name=NC_012967:2850615..2853503 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2841166..2844054
<gbrowseImage> name=NC_012759:2841166..2844054 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2957540..2954652
<gbrowseImage> name=AC_000091:2954652..2957540 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3050776..3047888
<gbrowseImage> name=NC_010473:3047888..3050776 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ptrAH88R

H88R

Loss of activity and of Zn-binding

seeded from UniProt:P05458

ptrAE162Q

E162Q

20% loss of activity

seeded from UniProt:P05458

ptrAE169Q

E169Q

Loss of activity and of Zn-binding

seeded from UniProt:P05458

ptrAE204Q

E204Q

No loss of activity

seeded from UniProt:P05458

ptrAE91Q

E91Q

Loss of activity

seeded from UniProt:P05458

ptrAH92R

H92R

Loss of activity and of Zn-binding

seeded from UniProt:P05458

Δptr::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[3]

Δptr::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[3]

Δptr::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938[3]

Δptr::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938[3]

ΔptrA746::kan

PMID:16738554[4]

CGSC:113619


edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10786

EchoBASE (EcoliWiki Page)

EchoBASE:EB0779

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2821

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3415

EcoGene (EcoliWiki Page)

EcoGene:EG10786

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:PTR

CGSC (EcoliWiki Page)

CGSC:351

ASAP (EcoliWikiPage)

ASAP:ABE-0009252


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ptrA:Gene&oldid=1178858"