csrA:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
Convert to gbrowse_img.php extension.
Line 75: Line 75:
60.72 minutes 
60.72 minutes 
|
|
MG1655: 2817168..2816983<br />{{GBrowseFigureByCoord|2816983|2817168|ecoli|MG1655}}
MG1655: 2817168..2816983<br /><gbrowseImage>
name=NC_000913:2816983..2817168
source=ecoli
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11447 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG11447 EcoCyc]
Line 89: Line 94:


|
|
NC_012967: 2714005..2713820<br />{{GBrowseFigureByCoord|2713820|2714005|REL606|NC_012967}}
NC_012967: 2714005..2713820<br /><gbrowseImage>
name=NC_012967:2713820..2714005
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|REL606|NC_012967|2713820|2714005|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|2713820|2714005|GBrowse (REL606)}}
Line 100: Line 110:


|
|
NC_012759: 2702795..2702980<br />{{GBrowseFigureByCoord|2702795|2702980|BW2952|NC_012759}}
NC_012759: 2702795..2702980<br /><gbrowseImage>
name=NC_012759:2702795..2702980
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|BW2952|012759|2702795|NC_2702980|GBrowse (BW2952)}}
{{GBrowseLink|BW2952|012759|2702795|NC_2702980|GBrowse (BW2952)}}
Line 111: Line 126:
&nbsp;
&nbsp;
|
|
W3110: 2817802..2817617<br />{{GBrowseFigureByCoord|2817617|2817802|ecoli_W3110|W3110}}
W3110: 2817802..2817617<br /><gbrowseImage>
name=AC_000091:2817617..2817802
source=ecoli_W3110
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|2816617|2818802|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|AC_000091|2816617|2818802|GBrowse(W3110)}}  
Line 122: Line 142:


|
|
DH10B: 2909710..2909525<br />{{GBrowseFigureByCoord|2909525|2909710|ecoli_DH10B|DH10B}}
DH10B: 2909710..2909525<br /><gbrowseImage>
name=NC_010473:2909525..2909710
source=ecoli_DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|2909155|2910080|GBrowse(DH10B)}}
{{GBrowseLink|ecoli_DH10B|NC_010473|2909155|2910080|GBrowse(DH10B)}}

Revision as of 20:30, 26 July 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

csrA

Mnemonic

Carbon storage regulator

Synonyms

ECK2691, b2696, JW2666, zfiA[1]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

60.72 minutes 

MG1655: 2817168..2816983
<gbrowseImage> name=NC_000913:2816983..2817168 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2714005..2713820
<gbrowseImage> name=NC_012967:2713820..2714005 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2702795..2702980
<gbrowseImage> name=NC_012759:2702795..2702980 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2817802..2817617
<gbrowseImage> name=AC_000091:2817617..2817802 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2909710..2909525
<gbrowseImage> name=NC_010473:2909525..2909710 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

csrA905

CGSC:72207


edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2666

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCCTGATTCTGACTCGTCGAGT

Primer 2:CCGTAACTGGACTGCTGGGATTT

pheA18::Tn10

Linked marker

CAG12158 = CGSC7421[3]

est. P1 cotransduction: % [4]

srlD3131::Tn10

Linked marker

CAG18642 = CGSC7423[3]

est. P1 cotransduction: 75% [4]
Synonyms:zfh-3131::Tn10, zfi-3131::Tn10

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11447

EchoBASE (EcoliWiki Page)

EchoBASE:EB1416

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2696

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3249

EcoGene (EcoliWiki Page)

EcoGene:EG11447

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:CSRA

CGSC (EcoliWiki Page)

CGSC:34504

ASAP (EcoliWikiPage)

ASAP:ABE-0008866


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=csrA:Gene&oldid=1175560"