yffL:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Data loaded by TableEdit_Loader.
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
Line 84: Line 84:
|-  
|-  
|
|
[[DH10B]]
[[BW2952]]
|
|


|
|
DH10B: 2650044..2650685<br />{{GBrowseFigureByCoord|2650044|2650685|ecoli_DH10B|DH10B}}
NC_012759: 2444084..2444725<br />{{GBrowseFigureByCoord|2444084|2444725|BW2952|NC_012759}}
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|2648762|2651967|GBrowse(DH10B)}}
{{GBrowseLink|BW2952|012759|2444084|NC_2444725|GBrowse (BW2952)}}
|
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|2648762|2651967|FASTA Dump}}  
{{GBrowseFastaLink|BW2952|012759|2444084|NC_2444725|FASTA Dump}}  
|-  
|-  
|
|
[[BW2952]]
[[DH10B]]
|
|


|
|
NC_012759: 2444084..2444725<br />{{GBrowseFigureByCoord|2444084|2444725|BW2952|NC_012759}}
DH10B: 2650044..2650685<br />{{GBrowseFigureByCoord|2650044|2650685|ecoli_DH10B|DH10B}}
|
|
{{GBrowseLink|BW2952|012759|2444084|NC_2444725|GBrowse (BW2952)}}
{{GBrowseLink|ecoli_DH10B|NC_010473|2648762|2651967|GBrowse(DH10B)}}
|
|
{{GBrowseFastaLink|BW2952|012759|2444084|NC_2444725|FASTA Dump}}  
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|2648762|2651967|FASTA Dump}}  


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 125: Line 125:
{|  id="F46a9de287d3b9"  class=" tableEdit Gene_sequence_features_table"   
{|  id="F46a9de287d3b9"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15451.F46a9de287d3b9&page=15451&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.15451.F46a9de287d3b9&page=15451&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.15451.F46a9de287d3b9-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.15451.F46a9de287d3b9-->

Revision as of 23:52, 10 May 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

yffL

Mnemonic

Systematic nomenclature

Synonyms

ECK2438, b2443, unique to MG1655[1]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

55.14 minutes 

MG1655: 2558279..2558920
gbrowse_img.php?coord=2558279..2558920&genome=ecoli&name=MG1655&trackset=0&width=300&.png

BW2952

NC_012759: 2444084..2444725
gbrowse_img.php?coord=2444084..2444725&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

DH10B

DH10B: 2650044..2650685
gbrowse_img.php?coord=2650044..2650685&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[2]

Status:

Primer 1:

Primer 2:

nupC510::Tn10

Linked marker

CAG18468 = CGSC7410[3]

est. P1 cotransduction: 11% [4]

purC80::Tn10

Linked marker

CAG18470 = CGSC7413[3]

est. P1 cotransduction: 24% [4]

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7273

EchoBASE (EcoliWiki Page)

EchoBASE:EB3925

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2443

EcoGene (EcoliWiki Page)

EcoGene:EG14173

ASAP (EcoliWikiPage)

ASAP:ABE-0008055


edit table


Notes

Links

[back to top]



<protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yffL:Gene&oldid=1090796"