sgrT:Expression: Difference between revisions

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==Overview==
==Overview==
{{{OVERVIEW}}}


==Intracellular Levels==
 
==Cellular Levels==
{{BacktoTop}}
{{BacktoTop}}
{{{MOLECULES_PER_CELL_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.150152.L49d3a576e87d5-->
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|- align='left' bgcolor='#CCCCFF'
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
0<sup>a</sup>
|
molecules/cell/generation
|
*Medium: MOPS Complete 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
Low confidence in the sequencing data set.
|
PMID: 24766808
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
0<sup>a</sup>
|
molecules/cell/generation
|
*Medium: MOPS Minimal 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
Low confidence in the sequencing data set.
|
PMID: 24766808
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
0<sup>a</sup>
 
|
molecules/cell/generation
|
*Medium: MOPS Complete without Methionine 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
Low confidence in the sequencing data set.
|
PMID: 24766808
 
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===Notes===
===Notes===
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{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
|{{{OPERONS_TABLE}}}||{{{RegulonDB_figure}}}
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!|Transcription unit(s)
 
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<!--Transcription_notes--></protect>
<!--Transcription_notes--></protect>
===Notes===
===Notes===
{{{TRANSCRIPTION_NOTES}}}
 


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
{{BacktoTop}}
{{BacktoTop}}
<protect>{{{GBrowse_Nterm_figure}}}
<protect>
<!--Translation_notes--></protect>
<!--Translation_notes--></protect>
===Notes===
===Notes===
{{{TRANSLATION_NOTES}}}
 


==Turnover and Regulation of Turnover==
==Turnover and Regulation of Turnover==
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===Notes===
===Notes===
{{{TURNOVER_NOTES}}}
 


==Experimental==
==Experimental==
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<protect>
<big>'''Mutations Affecting Expression'''</big>
<big>'''Mutations Affecting Expression'''</big>
{{{EXPRESSION_ALLELE_TABLE}}}
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!|Allele Name!!Mutation!!Phenotype!!Reference
 
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<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
{{{EXPRESSION_STUDIES_TABLE}}}
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!|Type!!Reference!!Notes
 
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<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
{{{EXPRESSION_RESOURCE_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.150152.Y49d3a57723499-->
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!|Resource Name!!Resource Type!!Description!!Source!!Notes
 
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<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
===Notes===
===Notes===
{{{EXPRESSION_EXPERIMENTAL_NOTES}}}
 


==Accessions Related to ''sgrT'' Expression==
==Accessions Related to ''sgrT'' Expression==
{{BacktoTop}}
{{BacktoTop}}
{{{GENE_ACCESSIONS_TABLE}}}
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!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:G0-10617
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG14467
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120033551
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
{{{EXPRESSION_ACCESSIONS_NOTES}}}
 


==Links==
==Links==
{{BacktoTop}}
{{BacktoTop}}
{{{LINKS}}}
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />


===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
{{{CATEGORIES}}}

Latest revision as of 18:22, 21 July 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID:24766808[1]

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID:24766808[1]

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID:24766808[1]

edit table


Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
edit table

||

|} </protect>

Notes

Translation and Regulation of Translation

[back to top]



Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental

[back to top]


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies

See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
edit table


Expression Resources

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table


Notes

Accessions Related to sgrT Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-10617

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14467

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120033551

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Li, GW et al. (2014) Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157 624-35 PubMed

Categories

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