User:Bmcintosh
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Name (Last, First) |
McIntosh, Brenley |
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Organization |
EcoliWiki Dept. of Biochemistry & Biophysics Texas A&M University |
Position |
Post-doctoral Research Associate |
Address |
Rm 443 Bio/Bio, MS2128 TAMU |
Contact Info |
|
Website(s) | |
Interests | |
Genes | |
Lab members |
Jim Hu, Debby Siegele, Daniel Renfro, Amanda Supak, Adrienne Zweifel, Nathan Liles, |
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</protect>
Expert AnnotatorYou have been awarded the gold star of annotation for being an Expert Annotator and completing 500+ annotations. Awared by Daniel May, 2009. |
About Me
My name is Brenley McIntosh and I am a post-doc in Jim's lab. I have 3 major projects in the lab:
- Designing CACAO 0.1 - a course to teach undergraduates to annotate scientific literature using GO terminology!
- Annotating genes in E. coli and its phages.
- Coding and uploading content, including more phage genomes.
<protect>
Contact Info | Snail Mail | |
---|---|---|
Brenley Kathleen McIntosh |
brenleymcintosh@gmail.com |
Dept. of Biochemistry and Biophysics Texas A&M University College Station, Texas 77843-2128 |
edit table |
</protect>
About the wiki and me
I have a background in phage genetics, but I would love to hear about your project! Please feel free to contact me about content you would like to see on the wiki.
About the pictures
I am a runner at heart (ok, jogger) and these are from my marathon in 2005. I have finished the Houston Marathon and Half Marathon, Calgary Stampede Half Marathon and too many 5km and 10km races to count.
PMIDs
[1] [2] [3] [4] [5] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [15] [16] [17] [18] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [28] [29] [30] [31] [32] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [50] [51] [52] [53] [54] [55] [55] [56] [57] [58] [59] [60] [61] [62] [63] [63] [64] [65] [66] [67] [68] [69] [70] [70] [71] [72] [73] [74] [75] [76] [77] [77] [78] [79] [80] [80] [80] [81] [82] [83] [84] [84] [85] [86] [87] [88] [89] [90] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [99] [100] [101] [102] [103] [104] [104] [105] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [168] [169] [170] [171] [172] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [181] [182] [183] [184] [185] [185] [186] [187] [188] [189] [190] [191] [191] [191] [191] [191]
- ↑ Song, J et al. (2010) Nuclear magnetic resonance evidence for the role of the flexible regions of the E1 component of the pyruvate dehydrogenase complex from gram-negative bacteria. J. Biol. Chem. 285 4680-94 PubMed
- ↑ Salsbury, FR Jr (2010) Effects of Cisplatin binding to DNA on the dynamics of the E. Coli MutS dimer. Protein Pept. Lett. 17 744-50 PubMed
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- ↑ 15.0 15.1 Kim, HK et al. (2010) 5S rRNA-assisted DnaK refolding. Biochem. Biophys. Res. Commun. 391 1177-81 PubMed
- ↑ Nagy, M et al. (2010) Synergistic cooperation between two ClpB isoforms in aggregate reactivation. J. Mol. Biol. 396 697-707 PubMed
- ↑ Price, CE & Driessen, AJ (2010) Conserved negative charges in the transmembrane segments of subunit K of the NADH:ubiquinone oxidoreductase determine its dependence on YidC for membrane insertion. J. Biol. Chem. 285 3575-81 PubMed
- ↑ 18.0 18.1 Tucker, NP et al. (2010) Essential roles of three enhancer sites in sigma54-dependent transcription by the nitric oxide sensing regulatory protein NorR. Nucleic Acids Res. 38 1182-94 PubMed
- ↑ Acharya, S & Patterson, K (2010) Mutations in the conserved glycine and serine of the MutS ABC signature motif affect nucleotide exchange, kinetics of sliding clamp release of mismatch and mismatch repair. Mutat. Res. 684 56-65 PubMed
- ↑ Jarosz, DF et al. (2009) A DinB variant reveals diverse physiological consequences of incomplete TLS extension by a Y-family DNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 106 21137-42 PubMed
- ↑ Burgos Zepeda, MY et al. (2010) C-terminal domain of the Uup ATP-binding cassette ATPase is an essential folding domain that binds to DNA. Biochim. Biophys. Acta 1804 755-61 PubMed
- ↑ Zhang, W et al. (2010) IscS functions as a primary sulfur-donating enzyme by interacting specifically with MoeB and MoaD in the biosynthesis of molybdopterin in Escherichia coli. J. Biol. Chem. 285 2302-8 PubMed
- ↑ Maciag, M et al. (2010) ppGpp inhibits the activity of Escherichia coli DnaG primase. Plasmid 63 61-7 PubMed
- ↑ Jourdan, SS et al. (2010) The sequence of sites recognised by a member of the RNase E/G family can control the maximal rate of cleavage, while a 5'-monophosphorylated end appears to function cooperatively in mediating RNA binding. Biochem. Biophys. Res. Commun. 391 879-83 PubMed
- ↑ Suzuki, T & Miyauchi, K (2010) Discovery and characterization of tRNAIle lysidine synthetase (TilS). FEBS Lett. 584 272-7 PubMed
- ↑ Christensen-Dalsgaard, M et al. (2010) Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Mol. Microbiol. 75 333-48 PubMed
- ↑ Sim, SH et al. (2010) Escherichia coli ribonuclease III activity is downregulated by osmotic stress: consequences for the degradation of bdm mRNA in biofilm formation. Mol. Microbiol. 75 413-25 PubMed
- ↑ 28.0 28.1 Strömqvist, J et al. (2010) Estimating Z-ring radius and contraction in dividing Escherichia coli. Mol. Microbiol. 76 151-8 PubMed
- ↑ Korshunov, S & Imlay, JA (2010) Two sources of endogenous hydrogen peroxide in Escherichia coli. Mol. Microbiol. 75 1389-401 PubMed
- ↑ Schneider, S et al. (2010) Redesigning the active site of transaldolase TalB from Escherichia coli: new variants with improved affinity towards nonphosphorylated substrates. Chembiochem 11 681-90 PubMed
- ↑ Cox, J & Putonti, C (2010) Mechanisms responsible for a PhiX174 mutant's ability to infect Escherichia coli by phosphorylation. J. Virol. 84 4860-3 PubMed
- ↑ 32.0 32.1 Su, PT et al. (2010) Factors affecting daughter cells' arrangement during the early bacterial divisions. PLoS ONE 5 e9147 PubMed
- ↑ Yosef, I et al. (2010) Membrane protein biogenesis in Ffh- or FtsY-depleted Escherichia coli. PLoS ONE 5 e9130 PubMed
- ↑ Bissonnette, SA et al. (2010) The IbpA and IbpB small heat-shock proteins are substrates of the AAA+ Lon protease. Mol. Microbiol. 75 1539-49 PubMed
- ↑ Katayama, T et al. (2010) Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. Nat. Rev. Microbiol. 8 163-70 PubMed
- ↑ Teramoto, J et al. (2010) A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions. Nucleic Acids Res. 38 3605-18 PubMed
- ↑ Tolla, DA & Savageau, MA (2010) Regulation of aerobic-to-anaerobic transitions by the FNR cycle in Escherichia coli. J. Mol. Biol. 397 893-905 PubMed
- ↑ Szymanski, MR et al. (2010) Interactions of the Escherichia coli primosomal PriB protein with the single-stranded DNA. Stoichiometries, intrinsic affinities, cooperativities, and base specificities. J. Mol. Biol. 398 8-25 PubMed
- ↑ Zhang, X et al. (2010) Fermentation of glycerol to succinate by metabolically engineered strains of Escherichia coli. Appl. Environ. Microbiol. 76 2397-401 PubMed
- ↑ Li, H et al. (2010) DmsD, a Tat system specific chaperone, interacts with other general chaperones and proteins involved in the molybdenum cofactor biosynthesis. Biochim. Biophys. Acta 1804 1301-9 PubMed
- ↑ Heermann, R & Jung, K (2010) The complexity of the 'simple' two-component system KdpD/KdpE in Escherichia coli. FEMS Microbiol. Lett. 304 97-106 PubMed
- ↑ Bechtluft, P et al. (2010) Tight hydrophobic contacts with the SecB chaperone prevent folding of substrate proteins. Biochemistry 49 2380-8 PubMed
- ↑ Reinau, ME et al. (2010) The diversity of FtsY-lipid interactions. Biopolymers 93 595-606 PubMed
- ↑ Lloyd, GS et al. (2010) Targets for the MalI repressor at the divergent Escherichia coli K-12 malX-malI promoters. FEMS Microbiol. Lett. 305 28-34 PubMed
- ↑ MacPhee, DG & Ambrose, M (2010) Catabolite repression of SOS-dependent and SOS-independent spontaneous mutagenesis in stationary-phase Escherichia coli. Mutat. Res. 686 84-9 PubMed
- ↑ Vine, CE et al. (2010) Detection by whole genome microarrays of a spontaneous 126-gene deletion during construction of a ytfE mutant: confirmation that a ytfE mutation results in loss of repair of iron-sulfur centres in proteins damaged by oxidative or nitrosative stress. J. Microbiol. Methods 81 77-9 PubMed
- ↑ Chiancone, E & Ceci, P (2010) The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding. Biochim. Biophys. Acta 1800 798-805 PubMed
- ↑ Maheshwari, A et al. (2010) Equilibrium and kinetics of the unfolding and refolding of Escherichia coli Malate Synthase G monitored by circular dichroism and fluorescence spectroscopy. Biochimie 92 491-8 PubMed
- ↑ Fonville, NC et al. (2010) RecQ-dependent death-by-recombination in cells lacking RecG and UvrD. DNA Repair (Amst.) 9 403-13 PubMed
- ↑ 50.0 50.1 Zhou, H et al. (2010) Enhanced l-phenylalanine biosynthesis by co-expression of pheA(fbr) and aroF(wt). Bioresour. Technol. 101 4151-6 PubMed
- ↑ Hernick, M et al. (2010) Activation of Escherichia coli UDP-3-O-[(R)-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase by Fe2+ yields a more efficient enzyme with altered ligand affinity. Biochemistry 49 2246-55 PubMed
- ↑ Cámara, B et al. (2010) T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site. Proc. Natl. Acad. Sci. U.S.A. 107 2247-52 PubMed
- ↑ Chayot, R et al. (2010) An end-joining repair mechanism in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 107 2141-6 PubMed
- ↑ Rhodius, VA & Mutalik, VK (2010) Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, sigmaE. Proc. Natl. Acad. Sci. U.S.A. 107 2854-9 PubMed
- ↑ 55.0 55.1 Hoffmann, A et al. (2010) Structure and function of the molecular chaperone Trigger Factor. Biochim. Biophys. Acta 1803 650-61 PubMed
- ↑ Sangurdekar, DP et al. (2010) Thymineless death is associated with loss of essential genetic information from the replication origin. Mol. Microbiol. 75 1455-67 PubMed
- ↑ Pul, U et al. (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol. 75 1495-512 PubMed
- ↑ Nakamura, K & Katayama, T (2010) Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs. Mol. Microbiol. 76 302-17 PubMed
- ↑ Tobin, C et al. (2010) Ribosomes lacking protein S20 are defective in mRNA binding and subunit association. J. Mol. Biol. 397 767-76 PubMed
- ↑ Shen, B & Lutkenhaus, J (2010) Examination of the interaction between FtsZ and MinCN in E. coli suggests how MinC disrupts Z rings. Mol. Microbiol. 75 1285-98 PubMed
- ↑ Thomas, J et al. (2010) Utilization of positional isotope exchange experiments to evaluate reversibility of ATP hydrolysis catalyzed by Escherichia coli Lon protease. Biochem. Cell Biol. 88 119-28 PubMed
- ↑ Makowska-Grzyska, M & Kaguni, JM (2010) Primase directs the release of DnaC from DnaB. Mol. Cell 37 90-101 PubMed
- ↑ 63.0 63.1 Giuliodori, AM et al. (2010) The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Mol. Cell 37 21-33 PubMed
- ↑ Han, X et al. (2010) Escherichia coli genes that reduce the lethal effects of stress. BMC Microbiol. 10 35 PubMed
- ↑ Dyszel, JL et al. (2010) E. coli K-12 and EHEC genes regulated by SdiA. PLoS ONE 5 e8946 PubMed
- ↑ Kthiri, F et al. (2010) Protein aggregation in a mutant deficient in yajL, the bacterial homolog of the Parkinsonism-associated protein DJ-1. J. Biol. Chem. 285 10328-36 PubMed
- ↑ Wang, Q et al. (2010) Metabolic flux control at the pyruvate node in an anaerobic Escherichia coli strain with an active pyruvate dehydrogenase. Appl. Environ. Microbiol. 76 2107-14 PubMed
- ↑ Kozmin, SG et al. (2010) Role for CysJ flavin reductase in molybdenum cofactor-dependent resistance of Escherichia coli to 6-N-hydroxylaminopurine. J. Bacteriol. 192 2026-33 PubMed
- ↑ Kaminska, R & van der Woude, MW (2010) Establishing and maintaining sequestration of Dam target sites for phase variation of agn43 in Escherichia coli. J. Bacteriol. 192 1937-45 PubMed
- ↑ 70.0 70.1 Ford, B et al. (2010) Structural homology between the C-terminal domain of the PapC usher and its plug. J. Bacteriol. 192 1824-31 PubMed
- ↑ Eydallin, G et al. (2010) Genome-wide screening of genes whose enhanced expression affects glycogen accumulation in Escherichia coli. DNA Res. 17 61-71 PubMed
- ↑ Fernández-Ramírez, F et al. (2010) Nucleic acid and protein factors involved in Escherichia coli polynucleotide phosphorylase function on RNA. Biochimie 92 445-54 PubMed
- ↑ Pomerantz, RT & O'Donnell, M (2010) Direct restart of a replication fork stalled by a head-on RNA polymerase. Science 327 590-2 PubMed
- ↑ Nemeria, NS et al. (2010) Communication between thiamin cofactors in the Escherichia coli pyruvate dehydrogenase complex E1 component active centers: evidence for a "direct pathway" between the 4'-aminopyrimidine N1' atoms. J. Biol. Chem. 285 11197-209 PubMed
- ↑ Górna, MW et al. (2010) The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome. RNA 16 553-62 PubMed
- ↑ Barrick, JE et al. (2010) Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects. Mol. Biol. Evol. 27 1338-47 PubMed
- ↑ 77.0 77.1 Kumar, R & Shimizu, K (2010) Metabolic regulation of Escherichia coli and its gdhA, glnL, gltB, D mutants under different carbon and nitrogen limitations in the continuous culture. Microb. Cell Fact. 9 8 PubMed
- ↑ Kim, Y et al. (2010) Escherichia coli toxin/antitoxin pair MqsR/MqsA regulate toxin CspD. Environ. Microbiol. 12 1105-21 PubMed
- ↑ Banik, SD & Nandi, N (2010) Aminoacylation reaction in the histidyl-tRNA synthetase: fidelity mechanism of the activation step. J Phys Chem B 114 2301-11 PubMed
- ↑ 80.0 80.1 80.2 Sánchez-Romero, MA et al. (2010) Correlation between ribonucleoside-diphosphate reductase and three replication proteins in Escherichia coli. BMC Mol. Biol. 11 11 PubMed
- ↑ Severi, E et al. (2010) Characterization of a novel sialic acid transporter of the sodium solute symporter (SSS) family and in vivo comparison with known bacterial sialic acid transporters. FEMS Microbiol. Lett. 304 47-54 PubMed
- ↑ Luan, Q et al. (2010) Hairpin DNA probe based surface plasmon resonance biosensor used for the activity assay of E. coli DNA ligase. Analyst 135 414-8 PubMed
- ↑ Del Re, B et al. (2009) Extremely low frequency magnetic field exposure affects DnaK and GroEL expression in E. coli cells with impaired heat shock response. Gen. Physiol. Biophys. 28 420-4 PubMed
- ↑ 84.0 84.1 Doi, A et al. (2010) Comparison of the molecular influences of NO-induced lesions in DNA strands on the reactivity of polynucleotide kinases, DNA ligases and DNA polymerases. J. Biochem. 147 697-703 PubMed
- ↑ Nishiyama, S et al. (2010) Thermosensing function of the Escherichia coli redox sensor Aer. J. Bacteriol. 192 1740-3 PubMed
- ↑ Peña-Sandoval, GR & Georgellis, D (2010) The ArcB sensor kinase of Escherichia coli autophosphorylates by an intramolecular reaction. J. Bacteriol. 192 1735-9 PubMed
- ↑ Zhang, Z et al. (2010) Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli. J. Bacteriol. 192 2013-9 PubMed
- ↑ Picas, L et al. (2010) Preferential insertion of lactose permease in phospholipid domains: AFM observations. Biochim. Biophys. Acta 1798 1014-9 PubMed
- ↑ Weiss, SA et al. (2010) A study of cytochrome bo3 in a tethered bilayer lipid membrane. Biochim. Biophys. Acta 1797 1917-23 PubMed
- ↑ 90.0 90.1 Köhler, SD et al. (2010) The proline-rich domain of TonB possesses an extended polyproline II-like conformation of sufficient length to span the periplasm of Gram-negative bacteria. Protein Sci. 19 625-30 PubMed
- ↑ Rudolph, CJ et al. (2010) Is RecG a general guardian of the bacterial genome? DNA Repair (Amst.) 9 210-23 PubMed
- ↑ Gao, X et al. (2010) Mechanism of substrate recognition and transport by an amino acid antiporter. Nature 463 828-32 PubMed
- ↑ Szymanski, MR et al. (2010) The Escherichia coli PriA helicase specifically recognizes gapped DNA substrates: effect of the two nucleotide-binding sites of the enzyme on the recognition process. J. Biol. Chem. 285 9683-96 PubMed
- ↑ Fujiwara, K et al. (2010) Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A. J. Biol. Chem. 285 9971-80 PubMed
- ↑ Djoko, KY et al. (2010) Reaction mechanisms of the multicopper oxidase CueO from Escherichia coli support its functional role as a cuprous oxidase. J. Am. Chem. Soc. 132 2005-15 PubMed
- ↑ Wang, SC et al. (2010) Potassium is critical for the Ni(II)-responsive DNA-binding activity of Escherichia coli NikR. J. Am. Chem. Soc. 132 1506-7 PubMed
- ↑ Warnecke, T & Hurst, LD (2010) GroEL dependency affects codon usage--support for a critical role of misfolding in gene evolution. Mol. Syst. Biol. 6 340 PubMed
- ↑ Mahendran, KR et al. (2010) Permeation of antibiotics through Escherichia coli OmpF and OmpC porins: screening for influx on a single-molecule level. J Biomol Screen 15 302-7 PubMed
- ↑ 99.0 99.1 Liao, JH et al. (2010) Binding and cleavage of E. coli HUbeta by the E. coli Lon protease. Biophys. J. 98 129-37 PubMed
- ↑ Holland, PJ & Hollis, T (2010) Structural and mutational analysis of Escherichia coli AlkB provides insight into substrate specificity and DNA damage searching. PLoS ONE 5 e8680 PubMed
- ↑ Volkmann, G et al. (2010) Intein-mediated cyclization of bacterial acyl carrier protein stabilizes its folded conformation but does not abolish function. J. Biol. Chem. 285 8605-14 PubMed
- ↑ Perla-Kajan, J et al. (2010) Properties of Escherichia coli EF-Tu mutants designed for fluorescence resonance energy transfer from tRNA molecules. Protein Eng. Des. Sel. 23 129-36 PubMed
- ↑ Hunke, C et al. (2010) The effect of NBD-Cl in nucleotide-binding of the major subunit alpha and B of the motor proteins F1FO ATP synthase and A1AO ATP synthase. J. Bioenerg. Biomembr. 42 1-10 PubMed
- ↑ 104.0 104.1 Mendillo, ML et al. (2009) A conserved MutS homolog connector domain interface interacts with MutL homologs. Proc. Natl. Acad. Sci. U.S.A. 106 22223-8 PubMed
- ↑ 105.0 105.1 Etson, CM et al. (2010) Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA. Proc. Natl. Acad. Sci. U.S.A. 107 1900-5 PubMed
- ↑ Loh, E et al. (2010) Optimization of DNA polymerase mutation rates during bacterial evolution. Proc. Natl. Acad. Sci. U.S.A. 107 1154-9 PubMed
- ↑ Boehr, DD et al. (2010) Millisecond timescale fluctuations in dihydrofolate reductase are exquisitely sensitive to the bound ligands. Proc. Natl. Acad. Sci. U.S.A. 107 1373-8 PubMed
- ↑ Sridharan, S et al. (2010) Crystal structure of Escherichia coli enterobactin-specific isochorismate synthase (EntC) bound to its reaction product isochorismate: implications for the enzyme mechanism and differential activity of chorismate-utilizing enzymes. J. Mol. Biol. 397 290-300 PubMed
- ↑ Clarke, DJ et al. (2010) Subdivision of the bacterioferritin comigratory protein family of bacterial peroxiredoxins based on catalytic activity. Biochemistry 49 1319-30 PubMed
- ↑ Epshtein, V et al. (2010) An allosteric mechanism of Rho-dependent transcription termination. Nature 463 245-9 PubMed
- ↑ Mauldin, RV & Lee, AL (2010) Nuclear magnetic resonance study of the role of M42 in the solution dynamics of Escherichia coli dihydrofolate reductase. Biochemistry 49 1606-15 PubMed
- ↑ Cotruvo, JA Jr & Stubbe, J (2010) An active dimanganese(III)-tyrosyl radical cofactor in Escherichia coli class Ib ribonucleotide reductase. Biochemistry 49 1297-309 PubMed
- ↑ Krylov, AA et al. (2010) Conditional silencing of the Escherichia coli pykF gene results from artificial convergent transcription protected from Rho-dependent termination. J. Mol. Microbiol. Biotechnol. 18 1-13 PubMed
- ↑ Persaud, C et al. (2010) Mutagenesis of the modified bases, m(5)U1939 and psi2504, in Escherichia coli 23S rRNA. Biochem. Biophys. Res. Commun. 392 223-7 PubMed
- ↑ Hayashi, M et al. (2010) Effect of multidrug-efflux transporter genes on dipeptide resistance and overproduction in Escherichia coli. FEMS Microbiol. Lett. 304 12-9 PubMed
- ↑ 116.0 116.1 Noda-García, L et al. (2010) Identification and analysis of residues contained on beta --> alpha loops of the dual-substrate (beta alpha)8 phosphoribosyl isomerase A specific for its phosphoribosyl anthranilate isomerase activity. Protein Sci. 19 535-43 PubMed
- ↑ Wang, F & Yang, W (2009) Structural insight into translesion synthesis by DNA Pol II. Cell 139 1279-89 PubMed
- ↑ Guymer, D et al. (2010) Intrinsic GTPase activity of a bacterial twin-arginine translocation proofreading chaperone induced by domain swapping. FEBS J. 277 511-25 PubMed
- ↑ Chang, JR et al. (2010) Assembly of bacteriophage P2 capsids from capsid protein fused to internal scaffolding protein. Virus Genes 40 298-306 PubMed
- ↑ Wang, P et al. (2010) Global change of gene expression and cell physiology in YidC-depleted Escherichia coli. J. Bacteriol. 192 2193-209 PubMed
- ↑ () PubMed
- ↑ Chakrabarti, KS et al. (2010) X-ray crystallographic and NMR studies of pantothenate synthetase provide insights into the mechanism of homotropic inhibition by pantoate. FEBS J. 277 697-712 PubMed
- ↑ Kidd, PB & Wingreen, NS (2010) Modeling the role of covalent enzyme modification in Escherichia coli nitrogen metabolism. Phys Biol 7 016006 PubMed
- ↑ Bharti, SK & Varshney, U (2010) Analysis of the impact of a uracil DNA glycosylase attenuated in AP-DNA binding in maintenance of the genomic integrity in Escherichia coli. Nucleic Acids Res. 38 2291-301 PubMed
- ↑ Trotter, V et al. (2009) The CsdA cysteine desulphurase promotes Fe/S biogenesis by recruiting Suf components and participates to a new sulphur transfer pathway by recruiting CsdL (ex-YgdL), a ubiquitin-modifying-like protein. Mol. Microbiol. 74 1527-42 PubMed
- ↑ Rothery, RA et al. (2010) Protein crystallography reveals a role for the FS0 cluster of Escherichia coli nitrate reductase A (NarGHI) in enzyme maturation. J. Biol. Chem. 285 8801-7 PubMed
- ↑ Montgomery, MG et al. (2010) Assembly of a 20-nm protein cage by Escherichia coli 2-hydroxypentadienoic acid hydratase. J. Mol. Biol. 396 1379-91 PubMed
- ↑ Smith, MA et al. (2010) Exploring the roles of the metal ions in Escherichia coli copper amine oxidase. Biochemistry 49 1268-80 PubMed
- ↑ Koutsioulis, D et al. (2010) Coordination sphere of the third metal site is essential to the activity and metal selectivity of alkaline phosphatases. Protein Sci. 19 75-84 PubMed
- ↑ 130.0 130.1 Mircheva, M et al. (2009) Predominant membrane localization is an essential feature of the bacterial signal recognition particle receptor. BMC Biol. 7 76 PubMed
- ↑ Florio, R et al. (2009) Structural stability of the cofactor binding site in Escherichia coli serine hydroxymethyltransferase--the role of evolutionarily conserved hydrophobic contacts. FEBS J. 276 7319-28 PubMed
- ↑ Li, Q et al. (2009) Bolaamphiphile-class surfactants can stabilize and support the function of solubilized integral membrane proteins. Biochemistry 48 11606-8 PubMed
- ↑ Zhang, X et al. (2009) Metabolic evolution of energy-conserving pathways for succinate production in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 106 20180-5 PubMed
- ↑ Minnihan, EC et al. (2009) Use of 3-aminotyrosine to examine the pathway dependence of radical propagation in Escherichia coli ribonucleotide reductase. Biochemistry 48 12125-32 PubMed
- ↑ McCrudden, MT et al. (2009) The contribution of key hydrophobic residues in ecotin to enzyme-inhibitor complex stability. J Enzyme Inhib Med Chem 24 1207-10 PubMed
- ↑ Britt, RL et al. (2010) Disassembly of Escherichia coli RecA E38K/DeltaC17 nucleoprotein filaments is required to complete DNA strand exchange. J. Biol. Chem. 285 3211-26 PubMed
- ↑ Kim, Y & Wood, TK (2010) Toxins Hha and CspD and small RNA regulator Hfq are involved in persister cell formation through MqsR in Escherichia coli. Biochem. Biophys. Res. Commun. 391 209-13 PubMed
- ↑ Schwartz, JJ & Quake, SR (2009) Single molecule measurement of the "speed limit" of DNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 106 20294-9 PubMed
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