lacZ:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''lacZ''  
''lacZ''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0341, b0344, JW0335''<ref name='LIB:Riley_2006'/>
''ECK0341, b0344, JW0335''<ref name='LIB:Riley_2006'/>, JW0335''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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β-galactosidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
beta-galactosidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  


Component of [[:Category:Complex:β-galactosidase|β-galactosidase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:β-galactosidase|β-galactosidase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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beta-D-galactosidase<ref name='LIB:Riley_2006'/>, B0344<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LacZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, β-D-galactosidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, lactase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, β-D-galactoside galactohydrolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''beta-D-galactosidase<ref name='LIB:Riley_2006'/>, B0344<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LacZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, beta-D-galactosidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, lactase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, beta-D-galactoside galactohydrolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0341, JW0335, b0344''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=lacZ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10527]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000520&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=lacZ&loc=MG1655%3A365529..362455,W3110%3A365529..362455,REL606%3A338861..335787,BW2952%3A4175805..4179047]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4175805&end=4179047&gene=lacZ&aa=mtmitdslavvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfawfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptgcysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflragenrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravleaevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklwsaeipnlyravvelhtadgtlieaeacdvgfrevriengllllngkpllirgvnrhehhplhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmvpmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdpsrpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyahamgnslggfakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqfcmnglvfadrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgkplasgevpldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwrlaenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplrdqftrapldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittahawqhqgktlfisrktyridgsgqmaitvdvevasdtphpariglncqlaqvaervnwlglgpqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisrysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwcqk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lacZ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=lacZ]]&nbsp;&nbsp;


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Repressed during biofilm formation. LacZ has an Ig-like domain: pfam PF00703 aligns to residues 221-334. ebgA, uidA and lacZ are paralogs. Binds TrxA (Kumar, 2004).<ref name='LIB:EcoGene'/>
Repressed during biofilm formation. LacZ has an Ig-like beta-sandwich domain (residues 221-334 align to PFAM: PF00703). ebgA, uidA and lacZ are paralogs. Binds TrxA (Kumar, 2004)<ref name='PMID:15004283'/>.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

lacZ

Gene Synonym(s)

ECK0341, b0344, JW0335[1], JW0335

Product Desc.

beta-galactosidase[2][3];

Component of β-galactosidase[2][3]

beta-D-Galactosidase[4]

Product Synonyms(s)

beta-D-galactosidase[1], B0344[2][1], LacZ[2][1], beta-D-galactosidase[2][1], lactase[2][1], beta-D-galactoside galactohydrolase[2][1] , ECK0341, JW0335, b0344

Function from GO

<GO_nr />

Knock-Out Phenotype

unable to grow on lactose as a carbon source

Regulation/Expression

transcription unit(s): lacZYA[2], lacZ, OP00045, lacAYZ

Regulation/Activity
Quick Links



        

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Notes

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Repressed during biofilm formation. LacZ has an Ig-like beta-sandwich domain (residues 221-334 align to PFAM: PF00703). ebgA, uidA and lacZ are paralogs. Binds TrxA (Kumar, 2004)[5].[4]



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Kumar, JK et al. (2004) Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 101 3759-64 PubMed
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