ftsZ:Expression: Difference between revisions

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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|ftsZ}}{{Tab|Gene|ftsZ}}{{Tab|Gene Product(s)|ftsZ}}{{Tab On|Expression|ftsZ}}{{Tab|Evolution|ftsZ}}{{Tab|On One Page|ftsZ}}{{TabsBottom}}
{{Tab|Quickview|ftsZ}}{{Tab|Gene|ftsZ}}{{Tab|Gene Product(s)|ftsZ}}{{Tab On|Expression|ftsZ}}{{Tab|Evolution|ftsZ}}{{Tab|On One Page|ftsZ}}{{TabsBottom}}
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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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</noinclude>[[Category:Txn_unit:mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ]]
</noinclude>
==Overview==
===Overview===
{{Expression_overview_placeholder}}
{{Expression_overview_placeholder}}
==Cellular Levels==
{{BacktoTop}}
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|- align='left' bgcolor='#CCCCFF'
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
|-
|
Protein
|
''E. coli'' K-12 MC4100
|
9.66E+02
|
molecules/cell
|
*Medium:  median data from rich and minimal media
*Temperature (°C):  37
*Doubling time (min): Growth Rate(min): 
*Growth phase: other:
|
emPAI
|
|
PMID:18304323
|-
|
Protein
|
''E. coli'' K-12 [http://ecoliwiki.net/colipedia/index.php/Category:Strain:EMG2 EMG2]
|
320
|
molecules/cell
|
*Medium: MOPS glucose minimal
*Temperature (°C): 37
*Doubling time (min):
*Growth phase: Exponential
*OD: OD600 = 0.2 to 0.25 
*other: aerated
|
Quantitative protein sequencing
|
Spot ID: M49
|
PMID: 9298646
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
6750
|
molecules/cell/generation
|
*Medium: MOPS Complete 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
|
PMID: 24766808
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
3335
|
molecules/cell/generation
|
*Medium: MOPS Minimal 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
|
PMID: 24766808
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
5290
|
molecules/cell/generation
|
*Medium: MOPS Complete without Methionine 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
|
PMID: 24766808
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===Notes===
Tetart ''et al.'' (1992) studied an ''E.coli'' strain that expressed ''ftsZ'' at one-fifth of its normal level, because of antisense regulation by DicF RNA<ref name='PMID:1552861'/>.
==Transcription and Transcriptional Regulation==
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
<protect>
{|{{Prettytable}}
{|{{Prettytable}}
|-
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46ab3733c703d"  class=" tableEdit Expression_operons_table" 
|- {{table heading style}}
|- {{table heading style}}
!Transcription unit(s)
!|Transcription unit(s)
|-
|-  
|
|
[[:Category:Txn_unit:mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ|mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ]]  
[[:Category:Txn_unit:mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ|mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ]]  
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|
[[:Category:Txn_unit:ftsZ|ftsZ]]
|-
|
[[:Category:Txn_unit:ftsAZ|ftsAZ]]
|-
|
[[:Category:Txn_unit:ftsQAZ|ftsQAZ]]
 
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|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..L46a03c3c95735-->||{{RegulonDBfig|ECK120000341.jpg|FTSZ}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.32726.N46ab3733c703d-->||{{RegulonDBfig|ECK120000341.jpg|ECK120000341}}
|}
|}
{{expression_transcription_help}}
 
<!--Transcription_notes--></protect>
<!--Transcription_notes--></protect>
===Notes===
===Notes===
{{Expression_transcription_placeholder}}
Robin ''et al.'' (1990) studied the transcriptional regulation of ''ftsZ'' gene using a ''lacZ'' operon fusions<ref name='PMID:2106510'/>
 
An increase in FtsZ results in an induction of minicell phenotype and additional division events every cell cycle. <ref name='PMID:2996784'/>
 
The amount of cellular FtsZ was increased by sdiA expression. <ref name='PMID:1915297'/>
 
FtsZ ring assembly and constriction requires FtsI activity. <ref name='PMID:9012823'/>


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
<protect>{{GBrowseFigureByCoord|105290|105320|ecoli|MG1655|GenesNew+DNA}}
{{BacktoTop}}
{{Expression_translation_help}}
<protect><gbrowseImage>
name=NC_000913:105285..105325
source=MG1655
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
{{Nterm_closeup}}
 
<!--Translation_notes--></protect>
<!--Translation_notes--></protect>
===Notes===
{{Expression_translation_placeholder}}
{{Expression_translation_placeholder}}


==Turnover and Regulation of Turnover==
==Turnover and Regulation of Turnover==
<!--Turnover_notes--></protect>
===Notes===
{{Expression_turnover_placeholder}}
{{Expression_turnover_placeholder}}


==Experimental==
==Experimental==
{{BacktoTop}}
<protect>
<protect>
===Mutations Affecting Expression===
<big>'''Mutations Affecting Expression'''</big>
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!Allele Name!!Mutation!!Phenotype!!Reference
!|Allele Name!!Mutation!!Phenotype!!Reference
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===Expression Studies===
 
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<big>'''Expression Studies'''</big>
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
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|- {{table heading style}}
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!Type!!Reference!!Notes
!|Type!!Reference!!Notes
|-class='sortbottom'
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|
microarray
|
[[geoprofiles:b0095|GEO Profiles:b0095]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
|
NCBI GEO profiles for ''ftsZ''
|-
|
microarray
|
[http://genexpdb.ou.edu/index.php?query=b0095 GenExpDB:b0095] ([[EcoliGenExpDB|EcoliWiki Page]])
|
Summary of data for ftsZ from multiple microarray studies 
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.32726.L46ab373505291&page=32726&pagename={{FULLPAGENAMEE}}&type=&template=Expression_studies_table edit table]</span> || ||
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===Expression Resources===
 
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<big>'''Expression Resources'''</big>
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
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|- {{table heading style}}
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!Resource Name!!Resource Type!!Description!!Source!!Notes
!|Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
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|
 
|
GFP Fusion
|
Intergenic region (104953..105117) fused to <i>gfpmut2</i>.
|
[http://www.openbiosystems.com/GeneExpression/Non-Mammalian/Bacteria/EcoliPromoters/ OpenBioSystems][[Category:Genes in OpenBioSystems with Promoter Fusions]]
|
GFP fusion described in Zaslaver, <i>et al.</i><br />Plate:109-AZ20; Well:A5<ref name="PMID: 16862137" />
|-
|
&lambda;JFL100
|
lacZ fusion
|
ftsZ-lacZ fusion on lambda transducing phage
PMID:2106510
 
|
 
|
 
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{{Expression_resource_table_help}}
 
<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
===Notes===
===Notes===




==Accessions Related to ftsZ Expression==
==Accessions Related to ''ftsZ'' Expression==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10347 EcoCyc:EG10347] 
EcoCyc:EG10347
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0343 EchoBASE:EB0343] 
EchoBASE:EB0343
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b0095 EcoliGenExpDB:b0095]
[http://chase.ou.edu/macro/searchlink.php?bnum=b0095 EcoliGenExpDB:b0095]
|
|
   
   
|-
|-
|
[[EcoGene]]
|
EcoGene:EG10347
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000341
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[ASAP]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG10347 EcoGene:EG10347] 
ASAP:ABE-0000333
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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{{Expression_accessions_table_help}}
 
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
{{EXPRESSION_ACCESSIONS_NOTES}}
 


==Links==
==Links==
{{BacktoTop}}
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<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Txn_unit:mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ]]
[[Category:Txn_unit:ftsZ]]
[[Category:Txn_unit:ftsAZ]]
[[Category:Txn_unit:ftsQAZ]]

Latest revision as of 19:37, 21 July 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

9.66E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323[1]

Protein

E. coli K-12 EMG2

320

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M49

PMID:9298646[2]

Protein

E. coli K-12 MG1655

6750

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID:24766808[3]

Protein

E. coli K-12 MG1655

3335

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID:24766808[3]

Protein

E. coli K-12 MG1655

5290

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID:24766808[3]

edit table

Notes

Tetart et al. (1992) studied an E.coli strain that expressed ftsZ at one-fifth of its normal level, because of antisense regulation by DicF RNA[4].

Transcription and Transcriptional Regulation

[back to top]


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ

ftsZ

ftsAZ

ftsQAZ

edit table
Figure courtesy of RegulonDB


Notes

Robin et al. (1990) studied the transcriptional regulation of ftsZ gene using a lacZ operon fusions[5]

An increase in FtsZ results in an induction of minicell phenotype and additional division events every cell cycle. [6]

The amount of cellular FtsZ was increased by sdiA expression. [7]

FtsZ ring assembly and constriction requires FtsI activity. [8]

Translation and Regulation of Translation

[back to top]


<gbrowseImage> name=NC_000913:105285..105325 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0095 (EcoliWiki Page)

NCBI GEO profiles for ftsZ

microarray

GenExpDB:b0095 (EcoliWiki Page)

Summary of data for ftsZ from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (104953..105117) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:A5[9]

λJFL100

lacZ fusion

ftsZ-lacZ fusion on lambda transducing phage PMID:2106510[5]


edit table

<protect>

Notes

Accessions Related to ftsZ Expression

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Database Accession Notes

EcoCyc

EcoCyc:EG10347

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0343

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0095

EcoGene

EcoGene:EG10347

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000341

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000333

Escherichia coli str. K-12 substr. MG1655

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Notes

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Ishihama, Y et al. (2008) Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9 102 PubMed
  2. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  3. ↑ 3.0 3.1 3.2 Li, GW et al. (2014) Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157 624-35 PubMed
  4. ↑ Tétart, F et al. (1992) Involvement of FtsZ in coupling of nucleoid separation with septation. Mol. Microbiol. 6 621-7 PubMed
  5. ↑ 5.0 5.1 Robin, A et al. (1990) Transcription of the ftsZ gene and cell division in Escherichia coli. J. Bacteriol. 172 1392-9 PubMed
  6. ↑ Ward, JE Jr & Lutkenhaus, J (1985) Overproduction of FtsZ induces minicell formation in E. coli. Cell 42 941-9 PubMed
  7. ↑ Wang, XD et al. (1991) A factor that positively regulates cell division by activating transcription of the major cluster of essential cell division genes of Escherichia coli. EMBO J. 10 3363-72 PubMed
  8. ↑ Pogliano, J et al. (1997) Inactivation of FtsI inhibits constriction of the FtsZ cytokinetic ring and delays the assembly of FtsZ rings at potential division sites. Proc. Natl. Acad. Sci. U.S.A. 94 559-64 PubMed
  9. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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