ispU:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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****************************************************************************************** -->{{Gene_nomenclature_help}}
{|{{Prettytable}}
{|   id="T46a9aa1749df2"  class=" tableEdit Gene_nomenclature_table" 
 
|-
!align=left {{table_heading_style}} |Standard name
||
''ispU''
|-
|-
!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Mnemonic
|
||
''ispU''
Isoprenoid
|-
|-
!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Synonyms
|
||
''ECK0173, b0174, JW0169, uppS, rth, yaeS''<ref name='LIB:Riley_2006'/>, yaeS''


|-
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!{{table_heading_style}} |Synonyms
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10923.T46a9aa1749df2&page=10923&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> ||
|
''ECK0173, b0174, JW0169, uppS, rth, yaeS''<ref name='LIB:Riley_2006'/>
|-
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===Notes===
===Notes===
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{|class = 'sortable' {{Prettytable}} id='125967'
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|- {{table_heading_style}}
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|-  
|
|
MG1655
MG1655
Line 72: Line 76:
4.2 minutes&nbsp;
4.2 minutes&nbsp;
|
|
MG1655: 194903..195664<br />{{GBrowseFigureByCoord|193903|196664|ecoli|MG1655}}
MG1655: 194903..195664<br /><gbrowseImage>
name=NC_000913:194903..195664
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6092 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G6092 EcoCyc]
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?q=MG1655:193903..196664 GBrowse(MG1655)]
{{GBrowseLink|MG1655|NC_000913|193903|196664|GBrowse(MG1655)}}
   
   
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli/?plugin=FastaDumper&name=MG1655:194903..195664&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|MG1655|NC_000913|194903|195664|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=G6092 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G6092 EcoCyc Sequence Dump]  
|-
|-
|
[[REL606]]
|
 
|
NC_012967: 197745..198506<br /><gbrowseImage>
name=NC_012967:197745..198506
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|REL606|NC_012967|197745|198506|GBrowse (REL606)}}
|
{{GBrowseFastaLink|REL606|NC_012967|197745|198506|FASTA Dump}}
|-
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[[BW2952]]
|
 
|
NC_012759: 194902..195663<br /><gbrowseImage>
name=NC_012759:194902..195663
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|BW2952|NC_012759|194902|195663|GBrowse (BW2952)}}
|
{{GBrowseFastaLink|BW2952|NC_012759|194902|195663|FASTA Dump}}
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W3110
W3110
Line 86: Line 127:
&nbsp;
&nbsp;
|
|
W3110: 194903..195664<br />{{GBrowseFigureByCoord|193903|196664|ecoli_W3110|W3110}}  
W3110: 194903..195664<br /><gbrowseImage>
name=NC_007779:194903..195664
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
{{GBrowseLink|W3110|NC_007779|193903|196664|GBrowse(W3110)}}
|
{{GBrowseFastaLink|W3110|NC_007779|194903|195664|FASTA Dump}}  
|-
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[[DH10B]]
|
 
|
DH10B: 169007..169768<br /><gbrowseImage>
name=NC_010473:169007..169768
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?q=W3110:193903..196664 GBrowse(W3110)]
{{GBrowseLink|DH10B|NC_010473|167485|171290|GBrowse(DH10B)}}
|
|
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:194903..195664&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|DH10B|NC_010473|167485|171290|FASTA Dump}}
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===Notes===
===Notes===
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|- {{table_heading_style}}
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-class='sortbottom'
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Coding Start (SO:0000323)
|
[[MG1655]]
|
194903
|
Edman degradation
|
PMID:9882662<br />
|
 
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====Notes====
====Notes====
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{|class = 'sortable' {{Prettytable}} id='125969'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46a9aa18ac5be"  class=" tableEdit Gene_allele_table dataTable" 
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-
|-  
|
uppSD26A
|
 
|
D26A
|
 
|
Great decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSL137A
|
 
|
L137A
|
 
|
Formation predominantly of a C(70) polymer rather than the C(55) polymer
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSD190A
|
 
|
D190A
|
 
|
No effect
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSW75A,F
|
 
|
W75A,F
|
 
|
Decrease in activity; reduced affinity for decaprenyl diphosphate substrate analog
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSD223A
|
 
|
D223A
|
 
|
No effect
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSD218A
|
 
|
D218A
|
 
|
Slight decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSW221F
|
 
|
W221F
|
 
|
Decrease in affinity for IPP
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSE81A
|
 
|
E81A
|
 
|
Slight decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSW31F
|
 
|
W31F
|
 
|
Decrease in activity; reduced affinity for decaprenyl diphosphate substrate analog
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSW91F
|
 
|
W91F
|
 
|
Decrease in affinity for IPP
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSW149F
|
 
|
W149F
|
 
|
Decrease in affinity for IPP
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSA143V
|
 
|
A143V
|
 
|
No effect on polymer length
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSI62A
|
 
|
I62A
|
 
|
Formation predominantly of C(60) and C(65) polymers rather than the C(55) polymer
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSH103A
|
 
|
H103A
|
 
|
No effect
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSA69L
|
 
|
A69L
|
 
|
Produces shorter polymers
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSS71A
|
 
|
S71A
|
 
|
Decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSE73A
|
 
|
E73A
|
 
|
Slight decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSN74A
|
 
|
N74A
|
 
|
Decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSR77A
|
 
|
R77A
|
 
|
Decrease in activity
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSV105A
|
 
|
V105A
|
 
|
Formation predominantly of C(60), C(65) and C(70) polymers rather than the C(55) polymer
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSD150A
|
 
|
D150A
|
 
|
Great decrease in affinity for the substrate
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSE198A
|
 
|
E198A
|
 
|
No effect
|
 
|
 
|
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
uppSW207F
|
 
|
W207F
|
 
|
Decrease in affinity for both IPP and decaprenyl diphosphate substrate analog
|
 
|
|
&Delta;ispU (Keio:)
 
|
|
deletion
seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
|-
|
|
deletion
uppSE213A
|
|


|
E213A
|
|


|
|
[[PMID:16738554]]<ref name=PMID:16738554/>
Great decrease in activity; reduced affinity for IPP
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen] 
 
|
|
 
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seeded from [http://www.uniprot.org/uniprot/P60472 UniProt:P60472]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10923.P46a9aa18ac5be&page=10923&pagename={{FULLPAGENAMEE}}&type=&template=Gene_allele_table edit table]</span> || || || || || || ||
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{{Gene_alleles_help}}
 
<protect><!--Alleles_notes--></protect>
<protect><!--Alleles_notes--></protect>
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.10923.V4e04be0596a10-->
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===Notes===


==Genetic Resources==
==Genetic Resources==
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JW0169
JW0169
Line 179: Line 670:
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
|
|
[[PMID:16769691]]<ref name=PMID:16769691/>
PMID:16769691


Status:Clone OK
Status:Clone OK
Line 186: Line 677:


Primer 2:CCGGCTGTTTCATCACCGGGCTC  
Primer 2:CCGGCTGTTTCATCACCGGGCTC  
|-
|-
|
[[:Category:Kohara_Phage:12D5|12D5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=120 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:E2B8|E2B8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=121 Genobase]
|
PMID:3038334
|-  
|
|
[[yadC:Gene|zad-220::Tn10]]
[[yadC:Gene|zad-220::Tn10]]
Line 195: Line 704:
|
|
est. P1 cotransduction: 12% <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: 12% <ref name='LIB:Nichols_linked_Tn'/>  
|-
|-  
|
|
[[yafC:Gene|yafC502::Tn10]]
[[yafC:Gene|yafC502::Tn10]]
Line 203: Line 712:
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
CAG18436 = [http://cgsc2.biology.yale.edu/Strain.php?ID=38989 CGSC7328]<ref name='LIB:cgsc'/>
|
|
est. P1 cotransduction: 22% <ref name='LIB:Nichols_linked_Tn'/>
est. P1 cotransduction: 22% <ref name='LIB:Nichols_linked_Tn'/> <br />
Synonyms:zae-502::Tn10


Synonyms:zae-502::Tn10
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===Notes===
===Notes===
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{|class = 'sortable' {{Prettytable}} id='125971'
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6092 EcoCyc:G6092] 
EcoCyc:G6092
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3113 EchoBASE:EB3113] 
EcoGene:EG13329
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
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[http://chase.ou.edu/macro/searchlink.php?bnum=b0174 EcoliGenExpDB:b0174] 
RegulonDB:ECK120002712
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://BioCyc.org/ECOL199310/new-image?object=C0211 ECOL199310CYC:C0211]
[http://www.ncbi.nlm.nih.gov/gene?term=944874 GeneID:944874]
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Escherichia coli str. K-12 substr. MG1655
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
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[http://ecogene.org/geneinfo.php?eg_id=EG13329 EcoGene:EG13329] 
EchoBASE:EB3113
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
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[http://BioCyc.org/ECOO157/new-image?object=YAES ECOO157CYC:YAES] 
ASAP:ABE-0000595
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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===Categories===
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:MG1655]]
[[Category:Gene List:W3110]]
[[Category:Gene List:W3110]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes not in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:isp genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:37, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ispU

Mnemonic

Isoprenoid

Synonyms

ECK0173, b0174, JW0169, uppS, rth, yaeS[1], yaeS

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

4.2 minutes 

MG1655: 194903..195664
<gbrowseImage> name=NC_000913:194903..195664 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 197745..198506
<gbrowseImage> name=NC_012967:197745..198506 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 194902..195663
<gbrowseImage> name=NC_012759:194902..195663 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 194903..195664
<gbrowseImage> name=NC_007779:194903..195664 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 169007..169768
<gbrowseImage> name=NC_010473:169007..169768 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

194903

Edman degradation

PMID:9882662[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

uppSD26A

D26A

Great decrease in activity

seeded from UniProt:P60472

uppSL137A

L137A

Formation predominantly of a C(70) polymer rather than the C(55) polymer

seeded from UniProt:P60472

uppSD190A

D190A

No effect

seeded from UniProt:P60472

uppSW75A,F

W75A,F

Decrease in activity; reduced affinity for decaprenyl diphosphate substrate analog

seeded from UniProt:P60472

uppSD223A

D223A

No effect

seeded from UniProt:P60472

uppSD218A

D218A

Slight decrease in activity

seeded from UniProt:P60472

uppSW221F

W221F

Decrease in affinity for IPP

seeded from UniProt:P60472

uppSE81A

E81A

Slight decrease in activity

seeded from UniProt:P60472

uppSW31F

W31F

Decrease in activity; reduced affinity for decaprenyl diphosphate substrate analog

seeded from UniProt:P60472

uppSW91F

W91F

Decrease in affinity for IPP

seeded from UniProt:P60472

uppSW149F

W149F

Decrease in affinity for IPP

seeded from UniProt:P60472

uppSA143V

A143V

No effect on polymer length

seeded from UniProt:P60472

uppSI62A

I62A

Formation predominantly of C(60) and C(65) polymers rather than the C(55) polymer

seeded from UniProt:P60472

uppSH103A

H103A

No effect

seeded from UniProt:P60472

uppSA69L

A69L

Produces shorter polymers

seeded from UniProt:P60472

uppSS71A

S71A

Decrease in activity

seeded from UniProt:P60472

uppSE73A

E73A

Slight decrease in activity

seeded from UniProt:P60472

uppSN74A

N74A

Decrease in activity

seeded from UniProt:P60472

uppSR77A

R77A

Decrease in activity

seeded from UniProt:P60472

uppSV105A

V105A

Formation predominantly of C(60), C(65) and C(70) polymers rather than the C(55) polymer

seeded from UniProt:P60472

uppSD150A

D150A

Great decrease in affinity for the substrate

seeded from UniProt:P60472

uppSE198A

E198A

No effect

seeded from UniProt:P60472

uppSW207F

W207F

Decrease in affinity for both IPP and decaprenyl diphosphate substrate analog

seeded from UniProt:P60472

uppSE213A

E213A

Great decrease in activity; reduced affinity for IPP

seeded from UniProt:P60472

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0169

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCATGTTGTCTGCTACTCAACC

Primer 2:CCGGCTGTTTCATCACCGGGCTC

12D5

Kohara Phage

Genobase

PMID:3038334[4]

E2B8

Kohara Phage

Genobase

PMID:3038334[4]

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[5]

est. P1 cotransduction: 12% [6]

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[5]

est. P1 cotransduction: 22% [6]
Synonyms:zae-502::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6092

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13329

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002712

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944874

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3113

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000595

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Apfel, CM et al. (1999) Use of genomics to identify bacterial undecaprenyl pyrophosphate synthetase: cloning, expression, and characterization of the essential uppS gene. J. Bacteriol. 181 483-92 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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