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W3110: 2701125..2700397<br /><gbrowseImage>
W3110: 2701125..2700397<br /><gbrowseImage>
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{{GBrowseLink|W3110|AC_000091|2699397|2702125|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|2699397|2702125|GBrowse(W3110)}}  
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{{GBrowseFastaLink|W3110|AC_000091|2700397|2701125|FASTA Dump}}  
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!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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{| {{Prettytable}} id="C46a9e10f2720c"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46a9e10f2720c"  class=" tableEdit Gene_allele_table dataTable"   
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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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Sensitivity to
Sensitivity to
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increases sensitivity to bicyclomycin
increases sensitivity to [[Bicyclomycin]]
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PMID:21357484
PMID:21357484
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fig 2  
fig 2  
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''recO1504''::Tn''5'' (KD2240)
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Resistant to
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Mutation increases resistance to Thymineless Death (TLD). Figure 1.
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PMID:2848620
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Parent Strain: KD2197


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!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46a9e11077356"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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EcoCyc:EG10832
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
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[[EcoGene]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10832 ECOCYC:EG10832]
EcoGene:EG10832
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[RegulonDB]]
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[http://ecogene.org/geneinfo.php?eg_id=EG10832 EcoGene:EG10832]
RegulonDB:ECK120000823
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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Escherichia coli str. K-12 substr. MG1655  
Escherichia coli str. K-12 substr. MG1655  
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[[EchoBASE]]
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EchoBASE:EB0825
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0008438
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 20:43, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

recO

Mnemonic

Recombination

Synonyms

ECK2563, b2565, JW2549[1], JW2549

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

58.19 minutes 

MG1655: 2700491..2699763
<gbrowseImage> name=NC_000913:2699763..2700491 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2623961..2623233
<gbrowseImage> name=NC_012967:2623233..2623961 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2585568..2586296
<gbrowseImage> name=NC_012759:2585568..2586296 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2701125..2700397
<gbrowseImage> name=NC_007779:2700397..2701125 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2792256..2791528
<gbrowseImage> name=NC_010473:2791528..2792256 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔrecO (Keio:JW2549)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC10028[3]

ΔrecO737::kan

PMID:16738554[2]

CGSC:102630

recO

deletion

Sensitivity to

increases sensitivity to Bicyclomycin

PMID:21357484[4]

fig 2

recO1504::Tn5 (KD2240)

Resistant to

Mutation increases resistance to Thymineless Death (TLD). Figure 1.

PMID:2848620[5]

Parent Strain: KD2197

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[6]

Status:

Primer 1:

Primer 2:

7G4

Kohara Phage

Genobase

PMID:3038334[7]

zfh-208::Tn10

Linked marker

CAG18481 = CGSC7417[3]

est. P1 cotransduction: 22% [8]
Synonyms:zff-208::Tn10

nadB51::Tn10

Linked marker

CAG18480 = CGSC7419[3]

est. P1 cotransduction: 72% [8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10832

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10832

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000823

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947038

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0825

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008438

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Tran, L et al. (2011) Single-gene deletion mutants of Escherichia coli with altered sensitivity to bicyclomycin, an inhibitor of transcription termination factor Rho. J. Bacteriol. 193 2229-35 PubMed
  5. ↑ Nakayama, K et al. (1988) Thymineless death in Escherichia coli mutants deficient in the RecF recombination pathway. Can. J. Microbiol. 34 905-7 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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