fliG:Gene Product(s): Difference between revisions

Standard name	FliG
Synonyms	flagellar motor switching and energizing component^[1], B1939^[2]^[1], FliG^[2]^[1] , ECK1937, flaAII.2, flaBII, JW1923, b1939
Product description	flagellar motor switch protein FliG^[2]^[3]; Component of Flagellar Motor Switch Complex^[3]; Flagellar Motor Complex^[2]^[3]; Flagellum^[3] Rotor protein for flagellar motor switching and energizing; role in flagellar assembly^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0001539	ciliary or flagellar motility	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000090	P	Seeded from EcoCyc (v14.0)	complete
	GO:0001539	ciliary or flagellar motility	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0283	P	Seeded from EcoCyc (v14.0)	complete
	GO:0003774	motor activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000090	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006935	chemotaxis	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000090	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006935	chemotaxis	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0145	P	Seeded from EcoCyc (v14.0)	complete
	GO:0071973	bacterial-type flagellar cell motility	PMID:8550421^[5]	IMP: Inferred from Mutant Phenotype		P	Fig. 5	complete
	GO:0009288	bacterial-type flagellum	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000090	C	Seeded from EcoCyc (v14.0)	complete
	GO:0009296	flagellum assembly	PMID:8550421^[5]	IMP: Inferred from Mutant Phenotype		P	Table 3	complete
	GO:0009288	bacterial-type flagellum	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0975	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005515	protein binding	PMID:17085573^[6]	IPI: Inferred from Physical Interaction	UniProtKB:P06974	F	Fig. 4	complete
	GO:0009425	bacterial-type flagellum basal body	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0142	C	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005515	protein binding	PMID:8604139^[7]	IPI: Inferred from Physical Interaction	UniProtKB:P25798	F	Fig. 3	complete
	GO:0005515	protein binding	PMID:8631704^[8]	IPI: Inferred from Physical Interaction	UniProtKB:P06974	F		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of Flagellar Motor Switch Complex	could be indirect
Protein	nadE		PMID:16606699^[9]	Experiment(s):EBI-1141425
Protein	uvrY		PMID:16606699^[9]	Experiment(s):EBI-1141425
Protein	rplB		PMID:16606699^[9]	Experiment(s):EBI-1141425
Protein	rsuA		PMID:16606699^[9]	Experiment(s):EBI-1141425
Protein	mukB		PMID:16606699^[9]	Experiment(s):EBI-1141425
Protein	rplD		PMID:16606699^[9]	Experiment(s):EBI-1141425
Protein	Subunits of Flagellar Motor Complex	could be indirect
Protein	Subunits of Flagellum	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSNLTGTDKS VILLMTIGED RAAEVFKHLS QREVQTLSAA MANVTQISNK QLTDVLAEFE QEAEQFAALN INANDYLRSV LVKALGEERA ASLLEDILET RDTASGIETL NFMEPQSAAD LIRDEHPQII ATILVHLKRA QAADILALFD ERLRHDVMLR IATFGGVQPA ALAELTEVLN GLLDGQNLKR SKMGGVRTAA EIINLMKTQQ EEAVITAVRE FDGELAQKII DEMFLFENLV DVDDRSIQRL LQEVDSESLL IALKGAEQPL REKFLRNMSQ RAADILRDDL ANRGPVRLSQ VENEQKAILL IVRRLAETGE MVIGSGEDTY V
Length	331
Mol. Wt	36.776 kDa
pI	4.5 (calculated)
Extinction coefficient	2,980 (calc based on 2 Y, 0 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	215..324	PF01706 FliG C-terminal domain		PMID:19920124^[10]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fliG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16129886	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946451	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006456	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0ABZ1	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11654	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11654	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946451	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001598	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1607	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 Lloyd, SA et al. (1996) Torque generation in the flagellar motor of Escherichia coli: evidence of a direct role for FliG but not for FliM or FliN. J. Bacteriol. 178 223-31 PubMed
↑ Brown, PN et al. (2007) Mutational analysis of the flagellar protein FliG: sites of interaction with FliM and implications for organization of the switch complex. J. Bacteriol. 189 305-12 PubMed
↑ Marykwas, DL et al. (1996) Interacting components of the flagellar motor of Escherichia coli revealed by the two-hybrid system in yeast. J. Mol. Biol. 256 564-76 PubMed
↑ Marykwas, DL & Berg, HC (1996) A mutational analysis of the interaction between FliG and FliM, two components of the flagellar motor of Escherichia coli. J. Bacteriol. 178 1289-94 PubMed
↑ ^9.0 ^9.1 ^9.2 ^9.3 ^9.4 ^9.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-flagellar motor switching and energizing component<ref name='LIB:Riley_2006'/>, B1939<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FliG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''flagellar motor switching and energizing component<ref name='LIB:Riley_2006'/>, B1939<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FliG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1937, flaAII.2, flaBII, JW1923, b1939''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|   id="L46aa87d6040c6"  class=" tableEdit GO_table_product dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46aa87d6040c6"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
 !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
@@ Line 217: / Line 217: @@
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-GO:0060286
+GO:0071973
 |
-flagellar cell motility
+bacterial-type flagellar cell motility
 |
 PMID:8550421
@@ Line 404: / Line 404: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|   id="R46aa87e353c94"  class=" tableEdit Product_interactions_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46aa87e353c94"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
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 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|   id="E46a81ac3aa9b5"  class=" tableEdit Product_localization_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46a81ac3aa9b5"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
 !|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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 !align=left {{table heading style}} |Extinction coefficient
 ||
-,980 (calc based on 2 Y,  W, and  C residues)
+,980 (calc based on 2 Y, 0 W, and 0 C residues)
 |- class="tableEdit_footer"
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 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|   id="P46aa87e731aee"  class=" tableEdit Product_motif_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46aa87e731aee"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
 !|Type!!Residues!!Description!!Notes!!References
@@ Line 647: / Line 647: @@
 View models at:
 * [http://www.proteinmodelportal.org/query/uniprot/P0ABZ1 Protein Model Portal]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0ABZ1 PSI-PRED (P0ABZ1)]
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0ABZ1 Genomes TO Protein (P0ABZ1)] (GTOP)
 |- class="tableEdit_footer"
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 ****************************************************************************************** -->{{Product_resources_help}}
-{|   id="N46aa87e7ea87a"  class=" tableEdit Product_resource_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46aa87e7ea87a"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
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 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|   id="H46aa87e852174"  class=" tableEdit Gene_accessions_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46aa87e852174"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16129886 GI:16129886]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_416449.1 GeneID:946451]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0006456
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0ABZ1 UniProtKB/Swiss-Prot:P0ABZ1]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG11654
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG11654
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/gene?term=946451 GeneID:946451]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:ECK120001598
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:EB1607
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |- class="tableEdit_footer"
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-{|   id="W46a81ac978f74"  class=" tableEdit Links_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46a81ac978f74"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments

fliG:Gene Product(s): Difference between revisions

Latest revision as of 20:45, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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fliG:Gene Product(s): Difference between revisions

Latest revision as of 20:45, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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