dnaA:Gene Product(s): Difference between revisions

Standard name	DnaA
Synonyms	chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator^[1], B3702^[2]^[1], DnaA^[2]^[1], DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator^[2]^[1] , ECK3694, JW3679, b3702
Product description	DnaA transcriptional dual regulator^[2]^[3] DNA synthesis initiator and global transcription regulator; binds DNA at DnaA boxes, binds cardiolipin and other acidic phospholipids, binds ATP^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006275	regulation of DNA replication	PMID:12068813^[5]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0006260	DNA replication	PMID:12068813^[5]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0000166	nucleotide binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001957	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018312	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003688	DNA replication origin binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00377	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003688	DNA replication origin binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001957	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003688	DNA replication origin binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018312	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00377	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001957	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013159	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018312	F	Seeded from EcoCyc (v14.0)	complete
	GO:0043565	sequence-specific DNA binding	PMID:10551881^[6]	IDA: Inferred from Direct Assay		F		complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00377	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0086	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006270	DNA-dependent DNA replication initiation	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00377	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006270	DNA-dependent DNA replication initiation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001957	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006270	DNA-dependent DNA replication initiation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013159	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006270	DNA-dependent DNA replication initiation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018312	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006275	regulation of DNA replication	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00377	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006275	regulation of DNA replication	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001957	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006275	regulation of DNA replication	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013159	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006275	regulation of DNA replication	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018312	P	Seeded from EcoCyc (v14.0)	complete
	GO:0017111	nucleoside-triphosphatase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc (v14.0)	complete
	GO:0043565	sequence-specific DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010921	F	Seeded from EcoCyc (v14.0)	complete
	GO:0043565	sequence-specific DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013159	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	aspS	PMID:15690043^[7]	Experiment(s):EBI-883418
Protein	cca	PMID:15690043^[7]	Experiment(s):EBI-883418
Protein	dnaJ	PMID:15690043^[7]	Experiment(s):EBI-883418, EBI-890702
Protein	lpdA	PMID:15690043^[7]	Experiment(s):EBI-883418
Protein	nadE	PMID:15690043^[7]	Experiment(s):EBI-883418
Protein	rplB	PMID:15690043^[7]	Experiment(s):EBI-883418, EBI-890702
Protein	rplD	PMID:15690043^[7]	Experiment(s):EBI-883418
Protein	rpsB	PMID:15690043^[7]	Experiment(s):EBI-883418, EBI-890702
Protein	tufA	PMID:15690043^[7]	Experiment(s):EBI-883418
Protein	rpsI	PMID:16606699^[8]	Experiment(s):EBI-1146527
Protein	yfdS	PMID:16606699^[8]	Experiment(s):EBI-1146527
Protein	yibL	PMID:16606699^[8]	Experiment(s):EBI-1146527
Protein	rpsG	PMID:16606699^[8]	Experiment(s):EBI-1146527
Protein	groL	PMID:16606699^[8]	Experiment(s):EBI-1146527
Protein	dgt	PMID:16606699^[8]	Experiment(s):EBI-1146527
Protein	creC	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplC	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplL	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplN	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplO	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplP	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplV	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplW	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplX	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpmB	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsC	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsE	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsG	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsI	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsJ	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsM	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsN	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rpsT	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	ynhG	PMID:15690043^[7]	Experiment(s):EBI-890702
Protein	rplP	PMID:19402753^[9]	LCMS(ID Probability):99.5
Protein	rpsT	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rplO	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rplN	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rpsN	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rpsD	PMID:19402753^[9]	LCMS(ID Probability):95.6 MALDI(Z-score):19.412920
Protein	rpsM	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	nadE	PMID:19402753^[9]	MALDI(Z-score):23.368207
Protein	rpsJ	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rplB	PMID:19402753^[9]	LCMS(ID Probability):99.6 MALDI(Z-score):17.312848
Protein	tufB	PMID:19402753^[9]	MALDI(Z-score):22.493646
Protein	rplX	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rpsC	PMID:19402753^[9]	LCMS(ID Probability):99.6 MALDI(Z-score):6.532571
Protein	ynhG	PMID:19402753^[9]	LCMS(ID Probability):99.0
Protein	creC	PMID:19402753^[9]	LCMS(ID Probability):99.0
Protein	dnaJ	PMID:19402753^[9]	LCMS(ID Probability):99.6 MALDI(Z-score):17.405523
Protein	rplD	PMID:19402753^[9]	LCMS(ID Probability):96.5 MALDI(Z-score):23.806084
Protein	rplL	PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	Dps	PMID:18284581^[10]	Affinity chromatography and solid phase binding assay
Protein	Hda	PMID:11483528^[11]
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSLSLWQQCL ARLQDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN GLLTSFCGAD APQLRFEVGT KPVTQTPQAA VTSNVAAPAQ VAQTQPQRAA PSTRSGWDNV PAPAEPTYRS NVNVKHTFDN FVEGKSNQLA RAAARQVADN PGGAYNPLFL YGGTGLGKTH LLHAVGNGIM ARKPNAKVVY MHSERFVQDM VKALQNNAIE EFKRYYRSVD ALLIDDIQFF ANKERSQEEF FHTFNALLEG NQQIILTSDR YPKEINGVED RLKSRFGWGL TVAIEPPELE TRVAILMKKA DENDIRLPGE VAFFIAKRLR SNVRELEGAL NRVIANANFT GRAITIDFVR EALRDLLALQ EKLVTIDNIQ KTVAEYYKIK VADLLSKRRS RSVARPRQMA MALAKELTNH SLPEIGDAFG GRDHTTVLHA CRKIEQLREE SHDIKEDFSN LIRTLSS
Length	467
Mol. Wt	52.551 kDa
pI	8.9 (calculated)
Extinction coefficient	43,890 - 44,265 (calc based on 11 Y, 5 W, and 3 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	132..350	PF00308 Bacterial dnaA protein	PMID:19920124^[12]
Domain	375..444	PF08299 domain	PMID:19920124^[12]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=dnaA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131570	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948217	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012103	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P03004	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10235	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10235	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948217	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000229	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0231	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 Ogawa, T et al. (2002) The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli. Mol. Microbiol. 44 1367-75 PubMed
↑ Azam, TA & Ishihama, A (1999) Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J. Biol. Chem. 274 33105-13 PubMed
↑ ^7.00 ^7.01 ^7.02 ^7.03 ^7.04 ^7.05 ^7.06 ^7.07 ^7.08 ^7.09 ^7.10 ^7.11 ^7.12 ^7.13 ^7.14 ^7.15 ^7.16 ^7.17 ^7.18 ^7.19 ^7.20 ^7.21 ^7.22 ^7.23 ^7.24 ^7.25 ^7.26 ^7.27 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 ^8.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^9.00 ^9.01 ^9.02 ^9.03 ^9.04 ^9.05 ^9.06 ^9.07 ^9.08 ^9.09 ^9.10 ^9.11 ^9.12 ^9.13 ^9.14 ^9.15 ^9.16 ^9.17 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ Chodavarapu, S et al. (2008) Escherichia coli Dps interacts with DnaA protein to impede initiation: a model of adaptive mutation. Mol. Microbiol. 67 1331-46 PubMed
↑ Kato , J & Katayama, T (2001) Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J. 20 4253-62 PubMed
↑ ^12.0 ^12.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

dnaA:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B3702<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B3702<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3694, JW3679, b3702''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 75: / Line 75: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|   id="W46aafccab4f9c"  class=" tableEdit GO_table_product dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46aafccab4f9c"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
@@ Line 662: / Line 662: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|   id="R46aafcdab0fb5"  class=" tableEdit Product_interactions_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46aafcdab0fb5"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 1,039: / Line 1,039: @@
 |
 Experiment(s):EBI-890702<br />
+|-
+|
+Protein
+|
+rplP
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.5
+|-
+|
+Protein
+|
+rpsT
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplO
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplN
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsN
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsD
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):95.6 MALDI(Z-score):19.412920
+|-
+|
+Protein
+|
+rpsM
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+nadE
+|
+|
+PMID:19402753
+|
+MALDI(Z-score):23.368207
+|-
+|
+Protein
+|
+rpsJ
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):17.312848
+|-
+|
+Protein
+|
+tufB
+|
+|
+PMID:19402753
+|
+MALDI(Z-score):22.493646
+|-
+|
+Protein
+|
+rplX
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsC
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):6.532571
+|-
+|
+Protein
+|
+ynhG
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+creC
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+dnaJ
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):17.405523
+|-
+|
+Protein
+|
+rplD
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):96.5 MALDI(Z-score):23.806084
+|-
+|
+Protein
+|
+rplL
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
 |-
 |
@@ Line 1,079: / Line 1,277: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|   id="N46a888b77216a"  class=" tableEdit Product_localization_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46a888b77216a"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Source!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |- class="tableEdit_footer"
@@ Line 1,105: / Line 1,303: @@
 ****************************************************************************************** -->{{Product_physical_properties_help}}
 {|   id="Y46aafcdcdc9ab"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 1,150: / Line 1,352: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|   id="I46aafcdd62c15"  class=" tableEdit Product_motif_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46aafcdd62c15"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
 !|Type!!Residues!!Description!!Notes!!References
@@ Line 1,210: / Line 1,412: @@
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P03004 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P03004 PSI-PRED (P03004)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P03004 Genomes TO Protein (P03004)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 |- class="tableEdit_footer"
@@ Line 1,255: / Line 1,455: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|   id="E46aafcde39678"  class=" tableEdit Product_resource_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aafcde39678"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
@@ Line 1,277: / Line 1,477: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|   id="S46aafcde9f98e"  class=" tableEdit Gene_accessions_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46aafcde9f98e"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16131570 GI:16131570]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_418157.1 GeneID:948217]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=PD03831 EcoCyc:PD03831]
+ASAP:ABE-0012103
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P03004 UniProtKB/Swiss-Prot:P03004]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10235
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10235
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P03004 SwissModel:P03004]
+[http://www.ncbi.nlm.nih.gov/gene?term=948217 GeneID:948217]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[[uniprot:P03004|UniProt:P03004]]
+RegulonDB:ECK120000229
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418157 RefSeq:NP_418157]
+EchoBASE:EB0231
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |- class="tableEdit_footer"
@@ Line 1,327: / Line 1,562: @@
 *
 ****************************************************************************************** -->
-{|   id="V46a888bc95725"  class=" tableEdit Links_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a888bc95725"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
@@ Line 1,348: / Line 1,583: @@
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0006261_!_DNA-dependent DNA replication]][[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006350_!_transcription]][[Category:GO:0016564_!_transcription repressor activity]][[Category:GO:0016563_!_transcription activator activity]]
-[[Category:Pfam:PF00308_!_Bacterial dnaA  protein]]
-[[Category:Pfam:PF08299_!_domain]]

dnaA:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

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