mutM:Gene Product(s): Difference between revisions

Standard name	MutM
Synonyms	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase^[1], B3635^[2]^[1], Fpg^[2]^[1], MutM^[2]^[1] , ECK3625, fpg, JW3610, b3635
Product description	formamidopyrimidine DNA glycosylase^[2]^[3] Formamidopyrimidine-DNA glycosylase/AP lyase; 5'-terminal deoxyribophosphodiesterase; DNA repair; GC to TA; binds Zn(II)^[4]
EC number (for enzymes)	3.2.2.23^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0019104	DNA N-glycosylase activity	PMID:2664776^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0004519	endonuclease activity	PMID:2664776^[5]	IDA: Inferred from Direct Assay		F	nicking at AP sites	complete
	GO:0003676	nucleic acid binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010979	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015887	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003684	damaged DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012319	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003684	damaged DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015886	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00103	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000191	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	PMID:8473347^[6]	IDA: Inferred from Direct Assay		F		complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000214	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	PMID:8473347^[6]	IDA: Inferred from Direct Assay		F	Cu(II), Cd(II), Hg(II) bind the protein	complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012319	F	Seeded from EcoCyc (v14.0)	complete
	GO:0019104	DNA N-glycosylase activity	PMID:8473347^[6]	IDA: Inferred from Direct Assay		F		complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015886	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	PMID:8473347^[6]	IDA: Inferred from Direct Assay		F		complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015887	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:4.2.99.18	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	PMID:1731864^[7]	IDA: Inferred from Direct Assay		P		complete
	GO:0006281	DNA repair	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00103	P	Seeded from EcoCyc (v14.0)	complete
	GO:0003906	DNA-(apurinic or apyrimidinic site) lyase activity	PMID:1731864^[7]	IDA: Inferred from Direct Assay		F		complete
	GO:0004519	endonuclease activity	PMID:8473347^[6]	IDA: Inferred from Direct Assay		F		complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000191	P	Seeded from EcoCyc (v14.0)	complete
	GO:0019104	DNA N-glycosylase activity	PMID:1649454^[8]	EXP: Inferred from Experiment		F		complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000214	P	Seeded from EcoCyc (v14.0)	complete
	GO:0004519	endonuclease activity	PMID:1649454^[8]	EXP: Inferred from Experiment		F		complete
	GO:0004519	endonuclease activity	PMID:1731864^[7]	IDA: Inferred from Direct Assay		F		complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015887	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020629	P	Seeded from EcoCyc (v14.0)	complete
	GO:0019104	DNA N-glycosylase activity	PMID:10862773^[9]	IDA: Inferred from Direct Assay		F		complete
	GO:0006281	DNA repair	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0234	P	Seeded from EcoCyc (v14.0)	complete
	GO:0003684	damaged DNA binding	PMID:10862773^[9]	IDA: Inferred from Direct Assay		F		complete
	GO:0006284	base-excision repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012319	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006289	nucleotide-excision repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015886	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0227	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000191	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000214	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR012319	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015886	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR015887	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020629	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008270	zinc ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0862	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008534	oxidized purine base lesion DNA N-glycosylase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00103	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008534	oxidized purine base lesion DNA N-glycosylase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000191	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008534	oxidized purine base lesion DNA N-glycosylase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020629	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008534	oxidized purine base lesion DNA N-glycosylase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:3.2.2.23	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016829	lyase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0456	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0479	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046872	metal ion binding	PMID:8473347^[6]	IDA: Inferred from Direct Assay		F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	glpT		PMID:16606699^[10]	Experiment(s):EBI-1146365
Protein	thiI		PMID:16606699^[10]	Experiment(s):EBI-1146365
Protein	ilvI		PMID:16606699^[10]	Experiment(s):EBI-1146365
Protein	mscL		PMID:19402753^[11]	LCMS(ID Probability):98.9
Small Molecule	PMPS	Inhibitor	PMID:8473347^[6]	Activity Assays
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MPELPEVETS RRGIEPHLVG ATILHAVVRN GRLRWPVSEE IYRLSDQPVL SVQRRAKYLL LELPEGWIII HLGMSGSLRI LPEELPPEKH DHVDLVMSNG KVLRYTDPRR FGAWLWTKEL EGHNVLTHLG PEPLSDDFNG EYLHQKCAKK KTAIKPWLMD NKLVVGVGNI YASESLFAAG IHPDRLASSL SLAECELLAR VIKAVLLRSI EQGGTTLKDF LQSDGKPGYF AQELQVYGRK GEPCRVCGTP IVATKHAQRA TFYCRQCQK
Length	269
Mol. Wt	30.29 kDa
pI	8.6 (calculated)
Extinction coefficient	39,420 - 40,170 (calc based on 8 Y, 5 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P05523
Domain	2..115	PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain		PMID:19920124^[12]
Domain	241..269	PF06827 Zinc finger found in FPG and IleRS		PMID:19920124^[12]
Domain	129..220	PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain		PMID:19920124^[12]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mutM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131506	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946765	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011877	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P05523	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10329	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10329	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946765	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000323	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0325	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 O'Connor, TR & Laval, J (1989) Physical association of the 2,6-diamino-4-hydroxy-5N-formamidopyrimidine-DNA glycosylase of Escherichia coli and an activity nicking DNA at apurinic/apyrimidinic sites. Proc. Natl. Acad. Sci. U.S.A. 86 5222-6 PubMed
↑ ^6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 ^6.6 O'Connor, TR et al. (1993) Fpg protein of Escherichia coli is a zinc finger protein whose cysteine residues have a structural and/or functional role. J. Biol. Chem. 268 9063-70 PubMed
↑ ^7.0 ^7.1 ^7.2 Boiteux, S et al. (1992) Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): excision of purine lesions in DNA produced by ionizing radiation or photosensitization. Biochemistry 31 106-10 PubMed
↑ ^8.0 ^8.1 Michaels, ML et al. (1991) MutM, a protein that prevents G.C----T.A transversions, is formamidopyrimidine-DNA glycosylase. Nucleic Acids Res. 19 3629-32 PubMed
↑ ^9.0 ^9.1 Hazra, TK et al. (2000) Characterization of a novel 8-oxoguanine-DNA glycosylase activity in Escherichia coli and identification of the enzyme as endonuclease VIII. J. Biol. Chem. 275 27762-7 PubMed
↑ ^10.0 ^10.1 ^10.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ ^12.0 ^12.1 ^12.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

mutM:Gene Product(s): Difference between revisions

Latest revision as of 21:06, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="U46aaf7f836a6d"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase<ref name='LIB:Riley_2006'/>, B3635<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fpg<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MutM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase<ref name='LIB:Riley_2006'/>, B3635<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Fpg<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MutM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3625, fpg, JW3610, b3635''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 56: / Line 56: @@
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.23 3.2.2.23]<ref name='LIB:Riley_2006'/>
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.U46aaf7f836a6d&page=27835&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.U46aaf7f836a6d-->
@@ Line 75: / Line 75: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46aaf7f9558b8"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+GO:0019104
+|
+DNA N-glycosylase activity
+|
+PMID:2664776
+|
+IDA: Inferred from Direct Assay
+|
+|
+F
+|
+|
+complete
+|-
+|
+|
+GO:0004519
+|
+endonuclease activity
+|
+PMID:2664776
+|
+IDA: Inferred from Direct Assay
+|
+|
+F
+|
+nicking at AP sites
+|
+complete
 |-
 |
@@ Line 86: / Line 124: @@
 nucleic acid binding
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 94: / Line 132: @@
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0003677
+|
+DNA binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR015887
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 105: / Line 162: @@
 DNA binding
 |
-GO_REF:0000002<br />GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR015886<br />SP_KW:KW-0238
+SP_KW:KW-0238
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 124: / Line 181: @@
 damaged DNA binding
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 132: / Line 189: @@
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 139: / Line 196: @@
 |
-GO:0003824
+GO:0003684
 |
-catalytic activity
+damaged DNA binding
 |
-GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR015886<br />SP_KW:KW-0511
+InterPro:IPR015886
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 162: / Line 219: @@
 DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000003<br />GO_REF:0000020
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-EC:4.2.99.18<br />HAMAP:MF_00103
+HAMAP:MF_00103
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 177: / Line 234: @@
 |
-GO:0006281
+GO:0003906
 |
-DNA repair
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000214<br />SP_KW:KW-0234<br />HAMAP:MF_00103
+InterPro:IPR000191
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
-P
+|
+GO:0008270
+|
+zinc ion binding
+|
+PMID:8473347
+|
+IDA: Inferred from Direct Assay
+|
+|
+F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 196: / Line 272: @@
 |
-GO:0006284
+GO:0003906
 |
-base-excision repair
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR012319
+InterPro:IPR000214
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 215: / Line 291: @@
 |
-GO:0006289
+GO:0046872
 |
-nucleotide-excision repair
+metal ion binding
 |
-GO_REF:0000002
+PMID:8473347
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR015886
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Cu(II), Cd(II), Hg(II) bind the protein
 |
 complete
@@ Line 234: / Line 310: @@
 |
-GO:0006974
+GO:0003906
 |
-response to DNA damage stimulus
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0227
+InterPro:IPR012319
 |
-P
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 257: / Line 333: @@
 DNA N-glycosylase activity
 |
-PMID:2664776
+PMID:8473347
 |
 IDA: Inferred from Direct Assay
@@ Line 265: / Line 341: @@
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 272: / Line 348: @@
 |
-GO:0008270
+GO:0003906
 |
-zinc ion binding
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000214<br />InterPro:IPR010663<br />InterPro:IPR012319<br />InterPro:IPR015886<br />SP_KW:KW-0862
+InterPro:IPR015886
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 291: / Line 367: @@
 |
-GO:0008534
+GO:0003906
 |
-oxidized purine base lesion DNA N-glycosylase activity
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000002<br />GO_REF:0000003<br />GO_REF:0000020
+PMID:8473347
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-InterPro:IPR012319<br />EC:3.2.2.23<br />HAMAP:MF_00103
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 310: / Line 386: @@
 |
-GO:0016787
+GO:0003906
 |
-hydrolase activity
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0378
+InterPro:IPR015887
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 329: / Line 405: @@
 |
-GO:0016798
+GO:0003906
 |
-hydrolase activity, acting on glycosyl bonds
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000004
+GOA:spec<br />GO_REF:0000003
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0326
+EC:4.2.99.18
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006974
+|
+response to DNA damage stimulus
+|
+PMID:1731864
+|
+IDA: Inferred from Direct Assay
+|
+|
+P
+|
 |
 complete
@@ Line 348: / Line 443: @@
 |
-GO:0016829
+GO:0006281
 |
-lyase activity
+DNA repair
 |
-GO_REF:0000004
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0456
+HAMAP:MF_00103
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 367: / Line 462: @@
 |
-GO:0046872
+GO:0003906
 |
-metal ion binding
+DNA-(apurinic or apyrimidinic site) lyase activity
 |
-GO_REF:0000004
+PMID:1731864
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-SP_KW:KW-0479
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
 |-
 |
 |
-GO:0005737
+GO:0004519
 |
-cytoplasm
+endonuclease activity
 |
+PMID:8473347
 |
+IDA: Inferred from Direct Assay
 |
 |
-C
+F
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
 |
-required fields missing
+complete
 |-
 |
 |
-GO:0016799
+GO:0006281
 |
-hydrolase activity, hydrolyzing N-glycosyl compounds
+DNA repair
 |
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000214<br />InterPro:IPR012319<br />InterPro:IPR015886<br />InterPro:IPR015887
+InterPro:IPR000191
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 428: / Line 523: @@
 DNA N-glycosylase activity
 |
-PMID:2664776
+PMID:1649454
 |
-IDA: Inferred from Direct Assay
+EXP: Inferred from Experiment
 |
@@ Line 443: / Line 538: @@
 |
-GO:0004519
+GO:0006281
+|
+DNA repair
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000214
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0004519
 |
 endonuclease activity
 |
-PMID:2664776
+PMID:1649454
 |
-IDA: Inferred from Direct Assay
+EXP: Inferred from Experiment
 |
@@ Line 455: / Line 569: @@
 F
 |
-nicking at AP sites
 |
 complete
@@ Line 462: / Line 576: @@
 |
-GO:0008270
+GO:0004519
 |
-zinc ion binding
+endonuclease activity
 |
-PMID:8473347
+PMID:1731864
 |
 IDA: Inferred from Direct Assay
@@ Line 481: / Line 595: @@
 |
-GO:0046872
+GO:0006281
+|
+DNA repair
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR015887
 |
-metal ion binding
+P
 |
-PMID:8473347
+Seeded from [[EcoCyc]] (v14.0)
 |
-IDA: Inferred from Direct Assay
+complete
+|-
 |
 |
-F
+GO:0006281
+|
+DNA repair
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR020629
+|
+P
 |
-Cu(II), Cd(II), Hg(II) bind the protein
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 504: / Line 637: @@
 DNA N-glycosylase activity
 |
-PMID:8473347
+PMID:10862773
 |
 IDA: Inferred from Direct Assay
@@ Line 519: / Line 652: @@
 |
-GO:0003906
+GO:0006281
+|
+DNA repair
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0234
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0003684
 |
-DNA-(apurinic or apyrimidinic site) lyase activity
+damaged DNA binding
 |
-PMID:8473347
+PMID:10862773
 |
 IDA: Inferred from Direct Assay
@@ Line 532: / Line 684: @@
 |
+|
+complete
+|-
+|
+|
+GO:0006284
+|
+base-excision repair
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR012319
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006289
+|
+nucleotide-excision repair
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR015886
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 542: / Line 732: @@
 response to DNA damage stimulus
 |
-PMID:1731864
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0227
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
-IDA: Inferred from Direct Assay
+complete
+|-
 |
+|
+GO:0008152
+|
+metabolic process
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0326
 |
 P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
+|
+GO:0008270
+|
+zinc ion binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000191
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 557: / Line 785: @@
 |
-GO:0003906
+GO:0008270
+|
+zinc ion binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000214
 |
-DNA-(apurinic or apyrimidinic site) lyase activity
+F
 |
-PMID:1731864
+Seeded from [[EcoCyc]] (v14.0)
 |
-IDA: Inferred from Direct Assay
+complete
+|-
 |
+|
+GO:0008270
+|
+zinc ion binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR012319
 |
 F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
+|
+GO:0008270
+|
+zinc ion binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR015886
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 576: / Line 842: @@
 |
-GO:0004519
+GO:0008270
+|
+zinc ion binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR015887
 |
-endonuclease activity
+F
 |
-PMID:8473347
+Seeded from [[EcoCyc]] (v14.0)
 |
-IDA: Inferred from Direct Assay
+complete
+|-
 |
+|
+GO:0008270
+|
+zinc ion binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR020629
 |
 F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
+|
+GO:0008270
+|
+zinc ion binding
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0862
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 595: / Line 899: @@
 |
-GO:0019104
+GO:0008534
+|
+oxidized purine base lesion DNA N-glycosylase activity
+|
+GOA:hamap<br />GO_REF:0000020
+|
+IEA: Inferred from Electronic Annotation
+|
+HAMAP:MF_00103
 |
-DNA N-glycosylase activity
+F
 |
-PMID:1649454
+Seeded from [[EcoCyc]] (v14.0)
 |
-EXP: Inferred from Experiment
+complete
+|-
 |
+|
+GO:0008534
+|
+oxidized purine base lesion DNA N-glycosylase activity
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000191
 |
 F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
+|
+GO:0008534
+|
+oxidized purine base lesion DNA N-glycosylase activity
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR020629
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 614: / Line 956: @@
 |
-GO:0004519
+GO:0008534
 |
-endonuclease activity
+oxidized purine base lesion DNA N-glycosylase activity
 |
-PMID:1649454
+GOA:spec<br />GO_REF:0000003
 |
-EXP: Inferred from Experiment
+IEA: Inferred from Electronic Annotation
 |
+EC:3.2.2.23
 |
 F
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 633: / Line 975: @@
 |
-GO:0004519
+GO:0016829
 |
-endonuclease activity
+lyase activity
 |
-PMID:1731864
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0456
 |
 F
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 652: / Line 994: @@
 |
-GO:0019104
+GO:0046872
 |
-DNA N-glycosylase activity
+metal ion binding
 |
-PMID:10862773
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0479
 |
 F
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 671: / Line 1,013: @@
 |
-GO:0003684
+GO:0046872
 |
-damaged DNA binding
+metal ion binding
 |
-PMID:10862773
+PMID:8473347
 |
 IDA: Inferred from Direct Assay
@@ Line 683: / Line 1,025: @@
 F
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.P46aaf7f9558b8&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.P46aaf7f9558b8&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.P46aaf7f9558b8-->
@@ Line 700: / Line 1,042: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46aaf805e1462"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 736: / Line 1,078: @@
 |
 Experiment(s):EBI-1146365<br />
+|-
+|
+Protein
+|
+mscL
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):98.9
 |-
 |
@@ Line 748: / Line 1,101: @@
 Activity Assays
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.W46aaf805e1462&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.W46aaf805e1462&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.W46aaf805e1462-->
@@ Line 765: / Line 1,118: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a884f00b9da"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Source!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.L46a884f00b9da&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.L46a884f00b9da&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.L46a884f00b9da-->
@@ Line 790: / Line 1,143: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Q46aaf808060d4"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 818: / Line 1,175: @@
 ,420 - 40,170 (calc based on 8 Y, 5 W, and 6 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.Q46aaf808060d4&page=27835&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.Q46aaf808060d4&page=27835&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.Q46aaf808060d4-->
@@ Line 833: / Line 1,190: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46aaf8087c173"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
 |-
 |
@@ Line 844: / Line 1,201: @@
 Removed
 |
 [http://www.uniprot.org/uniprot/P05523#section_features UniProt:P05523]
+|
+|-
+|
+Domain
+|
+..115
+|
+[http://pfam.janelia.org/family/PF01149 PF01149  Formamidopyrimidine-DNA glycosylase N-terminal domain]
+|
+|
+PMID:19920124
+|-
+|
+Domain
+|
+..269
+|
+[http://pfam.janelia.org/family/PF06827 PF06827  Zinc finger found in FPG and IleRS]
+|
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.C46aaf8087c173&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+PMID:19920124
+|-
+|
+Domain
+|
+..220
+|
+[http://pfam.janelia.org/family/PF06831 PF06831  Formamidopyrimidine-DNA glycosylase H2TH domain]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.C46aaf8087c173&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.C46aaf8087c173--></td>
@@ Line 867: / Line 1,259: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="L46aaf808de187"  class=" tableEdit Product_structure_table"
 |-
@@ Line 880: / Line 1,272: @@
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P05523 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P05523 PSI-PRED (P05523)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P05523 Genomes TO Protein (P05523)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.L46aaf808de187&page=27835&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.L46aaf808de187&page=27835&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.L46aaf808de187-->
@@ Line 925: / Line 1,315: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aaf809d36d1"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.A46aaf809d36d1&page=27835&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.A46aaf809d36d1-->
@@ Line 947: / Line 1,337: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46aaf80a494e4"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10329-MONOMER EcoCyc:EG10329-MONOMER]
+[http://www.ncbi.nlm.nih.gov/protein/16131506 GI:16131506]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_418092.1 GeneID:946765]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0011877
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P05523 UniProtKB/Swiss-Prot:P05523]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10329
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10329
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P05523|UniProt:P05523]]
+[http://www.ncbi.nlm.nih.gov/gene?term=946765 GeneID:946765]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01149 PFAM:PF01149]
+RegulonDB:ECK120000323
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418092 RefSeq:NP_418092]
+EchoBASE:EB0325
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.N46aaf80a494e4-->
@@ Line 997: / Line 1,422: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46a884f658555"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.S46a884f658555&page=27835&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27835.S46a884f658555&page=27835&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27835.S46a884f658555-->
@@ Line 1,018: / Line 1,443: @@
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006281_!_DNA repair]][[Category:Products with structures in PDB]]

mutM:Gene Product(s): Difference between revisions

Latest revision as of 21:06, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

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