rpsL:Gene Product(s): Difference between revisions

Standard name	RpsL
Synonyms	30S ribosomal subunit protein S12^[1], B3342^[2]^[1], StrA^[2]^[1], AsuB^[2]^[1], RpsL^[2]^[1] , asuB, ECK3329, JW3304, strA, b3342
Product description	30S ribosomal subunit protein S12^[2]^[3]; Component of 30S ribosomal subunit^[2]^[3]; ribosome^[2]^[3] 30S ribosomal subunit protein S12; RNA chaperone^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000049	tRNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0820	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003735	structural constituent of ribosome	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005679	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003735	structural constituent of ribosome	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006032	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00403	P	Seeded from EcoCyc (v14.0)	complete
	GO:0022627	cytosolic small ribosomal subunit	PMID:4587209^[5]	IDA: Inferred from Direct Assay		C		complete
	GO:0006412	translation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005679	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006032	P	Seeded from EcoCyc (v14.0)	complete
	GO:0019843	rRNA binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00403	F	Seeded from EcoCyc (v14.0)	complete
	GO:0019843	rRNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0699	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046677	response to antibiotic	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0046	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of 30S ribosomal subunit	could be indirect
Protein	ycgL		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	hns		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	yedI		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	rplO		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	rplA		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	rpsI		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	rpsD		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	cspI		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	rplB		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	yedN		PMID:16606699^[6]	Experiment(s):EBI-1145610
Protein	Subunits of ribosome	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MATVNQLVRK PRARKVAKSN VPALEACPQK RGVCTRVYTT TPKKPNSALR KVCRVRLTNG FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTVRG ALDCSGVKDR KQARSKYGVK RPKA
Length	124
Mol. Wt	13.736 kDa
pI	11.3 (calculated)
Extinction coefficient	5,960 - 6,460 (calc based on 4 Y, 0 W, and 4 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0A7S3
Domain	2..123	PF00164 Ribosomal protein S12		PMID:19920124^[7]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpsL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131221	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947845	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0010919	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A7S3	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10911	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10911	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947845	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000902	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0904	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Wittmann-Liebold, B (1973) Studies on the primary structure of 20 proteins from Escherichia coli ribosomes by means of an improved protein sequenator. FEBS Lett. 36 247-9 PubMed
↑ ^6.00 ^6.01 ^6.02 ^6.03 ^6.04 ^6.05 ^6.06 ^6.07 ^6.08 ^6.09 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

rpsL:Gene Product(s): Difference between revisions

Latest revision as of 21:02, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="Z46aae31fd1d7a"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-S ribosomal subunit protein S12<ref name='LIB:Riley_2006'/>, B3342<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, StrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AsuB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''30S ribosomal subunit protein S12<ref name='LIB:Riley_2006'/>, B3342<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, StrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AsuB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , asuB, ECK3329, JW3304, strA, b3342''
 |-
 !align=left {{table heading style}} |Product description
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+|- class="tableEdit_footer"
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 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46aae32204082"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0046677
+GO:0000049
 |
-response to antibiotic
+tRNA binding
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0046
+SP_KW:KW-0820
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0030529
-|
-ribonucleoprotein complex
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0687
-|
-C
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0019843
-|
-rRNA binding
-|
-GO_REF:0000004<br />GO_REF:0000020
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0699<br />HAMAP:MF_00403
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 141: / Line 103: @@
 |
-GO:0015935
+GO:0003735
 |
-small ribosomal subunit
+structural constituent of ribosome
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 151: / Line 113: @@
 InterPro:IPR005679
 |
-C
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0006412
-|
-translation
-|
-GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000020
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR005679<br />InterPro:IPR006032<br />HAMAP:MF_00403
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0005840
-|
-ribosome
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR006032
-|
-C
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 202: / Line 126: @@
 structural constituent of ribosome
 |
-GO_REF:0000002<br />GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR005679<br />InterPro:IPR006032
+InterPro:IPR006032
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 217: / Line 141: @@
 |
-GO:0003723
+GO:0006412
 |
-RNA binding
+translation
 |
-GO_REF:0000004
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0694
+HAMAP:MF_00403
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0000049
-|
-tRNA binding
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0820
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0022626
-|
-cytosolic ribosome
-|
-|
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required field missing
-|-
-|
-|
-GO:0000372
-|
-Group I intron splicing
-|
-PMID:7958841
-|
-IDA: Inferred from Direct Assay
-|
 |
 P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 293: / Line 160: @@
 |
-GO:0033120
+GO:0022627
 |
-positive regulation of RNA splicing
+cytosolic small ribosomal subunit
 |
-PMID:7958841
+PMID:4587209
 |
 IDA: Inferred from Direct Assay
@@ Line 303: / Line 170: @@
 |
-P
+C
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
 |
-|
-GO:0034336
-|
-misfolded RNA binding
-|
-PMID:7958841
-|
-IDA: Inferred from Direct Assay
-|
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 331: / Line 179: @@
 |
-GO:0034337
+GO:0006412
 |
-RNA folding
+translation
-|
-PMID:7958841
-|
-IDA: Inferred from Direct Assay
-|
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0000049
-|
-tRNA binding
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0820
+InterPro:IPR005679
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0000372
-|
-Group I intron splicing
-|
-PMID:7958841
-|
-IDA: Inferred from Direct Assay
-|
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0003723
-|
-RNA binding
-|
-GO_REF:0000004<br />PMID:7958841
-|
-IDA: Inferred from Direct Assay
-|
-SP_KW:KW-0694<br />
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0003735
-|
-structural constituent of ribosome
-|
-GO_REF:0000002<br />GO_REF:0000002<br />PMID:4587209
-|
-IDA: Inferred from Direct Assay
-|
-InterPro:IPR005679<br />InterPro:IPR006032<br />
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0005840
-|
-ribosome
-|
-GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR006032<br />SP_KW:KW-0689
-|
-C
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 449: / Line 202: @@
 translation
 |
-GO_REF:0000020<br />GO_REF:0000002<br />GO_REF:0000002<br />PMID:321423<br />PMID:4579428
+GOA:interpro<br />GO_REF:0000002
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_00403<br />InterPro:IPR005679<br />InterPro:IPR006032<br /><br />
+InterPro:IPR006032
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 464: / Line 217: @@
 |
-GO:0015935
+GO:0019843
 |
-small ribosomal subunit
+rRNA binding
 |
-GO_REF:0000002
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR005679
+HAMAP:MF_00403
 |
-C
+F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 487: / Line 240: @@
 rRNA binding
 |
-GO_REF:0000020<br />GO_REF:0000004<br />PMID:2459389
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_00403<br />SP_KW:KW-0699<br />
+SP_KW:KW-0699
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 502: / Line 255: @@
 |
-GO:0022627
+GO:0046677
 |
-cytosolic small ribosomal subunit
+response to antibiotic
 |
-PMID:4587209<br />PMID:4922286
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
-<br />
+SP_KW:KW-0046
-|
-C
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0006412
-|
-translation
-|
-PMID:4579428
-|
-IDA: Inferred from Direct Assay
-|
 |
 P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
-Data in Table IV.
-|
-complete
-|-
-|
-|
-GO:0003735
-|
-structural constituent of ribosome
-|
-PMID:4587209
-|
-IDA: Inferred from Direct Assay
-|
-|
-F
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
-|
-|
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
-|
-GO:0022627
-|
-cytosolic small ribosomal subunit
-|
-PMID:4587209
-|
-IDA: Inferred from Direct Assay
-|
-|
-C
-|
 |
 complete
-|-
-|
-|
+|- class="tableEdit_footer"
-GO:0030529
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.N46aae32204082&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
-|
-ribonucleoprotein complex
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0687
-|
-C
-|
-Seeded from EcoCyc
-|
-complete
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.N46aae32204082&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
 |}
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 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
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+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.G46aae33575eb2&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
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-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46aae33764a54"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
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@@ Line 791: / Line 448: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.F46aae33764a54&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.F46aae33764a54-->
@@ Line 814: / Line 473: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="A46aae33912db1"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 829: / Line 492: @@
 !align=left {{table heading style}} |Mol. Wt
 ||
-.74 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.736 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
+.3 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-- 6460 (calc based on 4 Y, 0 W, and 4 C residues)
+,960 - 6,460 (calc based on 4 Y, 0 W, and 4 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.A46aae33912db1&page=27153&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.A46aae33912db1&page=27153&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.A46aae33912db1-->
@@ Line 854: / Line 517: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aae3398bab2"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P0A7S3#section_features UniProt:P0A7S3]
+|
 |-
 |
-Modification Site
+Domain
+|
+..123
 |
+[http://pfam.janelia.org/family/PF00164 PF00164  Ribosomal protein S12]
 |
--methylthioaspartic acid
 |
-[http://www.uniprot.org/uniprot/P0A7S3#section_features UniProt:P0A7S3]
+PMID:19920124
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.Y46aae3398bab2&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.Y46aae3398bab2&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.Y46aae3398bab2--></td>
@@ Line 879: / Line 555: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.I46a87434558a6-->
 <!--
@@ Line 887: / Line 564: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="I46a87434558a6"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>rpsL
+<beststructure>
-</beststructure>
+gene=rpsL
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=rpsL&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0A7S3 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=rpsL&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A7S3 PSI-PRED (P0A7S3)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A7S3 Genomes TO Protein (P0A7S3)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.I46a87434558a6&page=27153&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.I46a87434558a6-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 924: / Line 620: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46aae33a68781"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.C46aae33a68781&page=27153&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.C46aae33a68781-->
@@ Line 946: / Line 642: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46aae33ad16f1"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10911-MONOMER EcoCyc:EG10911-MONOMER]
+[http://www.ncbi.nlm.nih.gov/protein/16131221 GI:16131221]
 |
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_417801.1 GeneID:947845]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0010919
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0A7S3 UniProtKB/Swiss-Prot:P0A7S3]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10911
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10911
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P0A7S3|UniProt:P0A7S3]]
+[http://www.ncbi.nlm.nih.gov/gene?term=947845 GeneID:947845]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00164 PFAM:PF00164]
+RegulonDB:ECK120000902
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417801 RefSeq:NP_417801]
+EchoBASE:EB0904
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27153.T46aae33ad16f1&page=27153&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.T46aae33ad16f1-->
@@ Line 996: / Line 727: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46a8743711bc2"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27153.T46a8743711bc2-->
@@ Line 1,011: / Line 742: @@
 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0009281_!_cytosolic ribosome (sensu Bacteria)]][[Category:GO:0006412_!_translation]][[Category:GO:0003735_!_structural constituent of ribosome]][[Category:GO:0005737_!_cytoplasm]][[Category:Complex:30S ribosomal subunit]][[Category:Complex:ribosome]][[Category:Location:cytoplasm]]

rpsL:Gene Product(s): Difference between revisions

Latest revision as of 21:02, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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