galE:Gene Product(s): Difference between revisions

Standard name	GalE
Synonyms	UDP-galactose-4-epimerase^[1], B0759^[2]^[1], GalD^[2]^[1], GalE^[2]^[1] , ECK0748, galD, JW0742, b0759
Product description	UDP-glucose 4-epimerase^[2]^[3]; Component of UDP-glucose 4-epimerase^[2]^[3] UDP-galactose 4-epimerase; hexose-1-phosphate uridylyltransferase^[4]
EC number (for enzymes)	5.1.3.2^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003978	UDP-glucose 4-epimerase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005886	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003978	UDP-glucose 4-epimerase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:5.1.3.2	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005829	cytosol	PMID:16858726^[5]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0006012	galactose metabolic process	PMID:13914787^[6]	IMP: Inferred from Mutant Phenotype		P	Seeded from EcoCyc (v14.0)	complete
	GO:0006012	galactose metabolic process	PMID:7025059^[7]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0005975	carbohydrate metabolic process	PMID:7025059^[7]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0016052	carbohydrate catabolic process	PMID:7025059^[7]	IGI: Inferred from Genetic Interaction		P		Missing: with/from
	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	PMID:1821806^[8]	IDA: Inferred from Direct Assay		F		complete
	GO:0006012	galactose metabolic process	PMID:1821806^[8]	IDA: Inferred from Direct Assay		P		complete
	GO:0005737	cytoplasm	PMID:1821806^[8]	IDA: Inferred from Direct Assay		C		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of UDP-glucose 4-epimerase	could be indirect
Protein	rsuA		PMID:16606699^[9]	Experiment(s):EBI-1137880
Protein	yfcH		PMID:16606699^[9]	Experiment(s):EBI-1137880
Protein	nadE		PMID:16606699^[9]	Experiment(s):EBI-1137880
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MRVLVTGGSG YIGSHTCVQL LQNGHDVIIL DNLCNSKRSV LPVIERLGGK HPTFVEGDIR NEALMTEILH DHAIDTVIHF AGLKAVGESV QKPLEYYDNN VNGTLRLISA MRAANVKNFI FSSSATVYGD QPKIPYVESF PTGTPQSPYG KSKLMVEQIL TDLQKAQPDW SIALLRYFNP VGAHPSGDMG EDPQGIPNNL MPYIAQVAVG RRDSLAIFGN DYPTEDGTGV RDYIHVMDLA DGHVVAMEKL ANKPGVHIYN LGAGVGNSVL DVVNAFSKAC GKPVNYHFAP RREGDLPAYW ADASKADREL NWRVTRTLDE MAQDTWHWQS RHPQGYPD
Length	338
Mol. Wt	37.264 kDa
pI	6.3 (calculated)
Extinction coefficient	48,360 - 48,735 (calc based on 14 Y, 5 W, and 3 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	3..262	PF01370 NAD dependent epimerase/dehydratase family		PMID:19920124^[10]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=galE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:49176045	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945354	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002575	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P09147	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10362	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10362	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945354	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000355	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0357	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ SOFFER, RL (1961) Enzymatic expression of genetic units of function concerned with galactose metabolism in Escherichia coli. J. Bacteriol. 82 471-8 PubMed
↑ ^7.0 ^7.1 ^7.2 Fietta, A et al. (1981) R-factor-mediated suppression of the galactose-sensitive phenotype of Escherichia coli K-12 galE Mutants. Plasmid 6 78-85 PubMed
↑ ^8.0 ^8.1 ^8.2 Vorgias, CE et al. () Overexpression and purification of the galactose operon enzymes from Escherichia coli. Protein Expr. Purif. 2 330-8 PubMed
↑ ^9.0 ^9.1 ^9.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

galE:Gene Product(s): Difference between revisions

Latest revision as of 20:29, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 18: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
@@ Line 30: / Line 31: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_nomenclature_help}}
-{|{{Prettytable}}
+{|   id="E46aa4227b97b9"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
-GalE product
+GalE
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-UDP-galactose-4-epimerase product<ref name='LIB:Riley_2006'/>, B0759 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GalD product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GalE product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''UDP-galactose-4-epimerase<ref name='LIB:Riley_2006'/>, B0759<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GalD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GalE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0748, galD, JW0742, b0759''
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
-UDP-glucose 4-epimerase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+UDP-glucose 4-epimerase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
-Component of ; [[:Category:Complex:UDP-glucose 4-epimerase|UDP-glucose 4-epimerase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Component of [[:Category:Complex:UDP-glucose 4-epimerase|UDP-glucose 4-epimerase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+UDP-galactose 4-epimerase; hexose-1-phosphate uridylyltransferase<ref name='LIB:EcoGene'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.3.2 5.1.3.2]<ref name='LIB:Riley_2006'/>
+* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.3.2 5.1.3.2]<ref name='LIB:Riley_2006'/>
-|-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.E46aa4227b97b9&page=21293&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.E46aa4227b97b9&page=21293&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.E46aa4227b97b9-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 66: / Line 70: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.H46aa42291caff-->
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.21293.H46aa42291caff-->
 <!--
 ******************************************************************************************
@@ Line 72: / Line 76: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46aa42291caff"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-[[Category:GO:0003824_!_catalytic_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003824_!_catalytic_activity GO:0003824]
+GO:0003978
-|
-catalytic activity
-|
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
-|
-IEA: Inferred from Electronic Annotation
-|
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001509 InterPro:IPR001509]
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-[[Category:GO:0003978_!_UDP-glucose_4-epimerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003978_!_UDP-glucose_4-epimerase_activity GO:0003978]
 |
 UDP-glucose 4-epimerase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR005886 InterPro:IPR005886]
+InterPro:IPR005886
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 118: / Line 103: @@
 |
-[[Category:GO:0003978_!_UDP-glucose_4-epimerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003978_!_UDP-glucose_4-epimerase_activity GO:0003978]
+GO:0003978
 |
 UDP-glucose 4-epimerase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000003 GO_REF:0000003]
+GOA:spec<br />GO_REF:0000003
 |
 IEA: Inferred from Electronic Annotation
@@ Line 130: / Line 115: @@
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 137: / Line 122: @@
 |
-[[Category:GO:0005975_!_carbohydrate_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005975_!_carbohydrate_metabolic_process GO:0005975]
+GO:0005829
 |
-carbohydrate metabolic process
+cytosol
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+PMID:16858726
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-[http://www.uniprot.org/keywords/KW-0119 SP_KW:KW-0119]
 |
-P
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 156: / Line 141: @@
 |
-[[Category:GO:0006012_!_galactose_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006012_!_galactose_metabolic_process GO:0006012]
+GO:0006012
 |
 galactose metabolic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+PMID:13914787
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR005886 InterPro:IPR005886]
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 175: / Line 160: @@
 |
-[[Category:GO:0006012_!_galactose_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006012_!_galactose_metabolic_process GO:0006012]
+GO:0006012
 |
 galactose metabolic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+PMID:7025059
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-[http://www.uniprot.org/keywords/KW-0299 SP_KW:KW-0299]
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 194: / Line 179: @@
 |
-[[Category:GO:0016853_!_isomerase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016853_!_isomerase_activity GO:0016853]
+GO:0005975
 |
-isomerase activity
+carbohydrate metabolic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+PMID:7025059
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-[http://www.uniprot.org/keywords/KW-0413 SP_KW:KW-0413]
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 213: / Line 198: @@
 |
-[[Category:GO:0044237_!_cellular_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0044237_!_cellular_metabolic_process GO:0044237]
+GO:0016052
 |
-cellular metabolic process
+carbohydrate catabolic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+PMID:7025059
 |
-IEA: Inferred from Electronic Annotation
+IGI: Inferred from Genetic Interaction
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001509 InterPro:IPR001509]
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
-complete
+Missing: with/from
 |-
 |
 |
-[[Category:GO:0050662_!_coenzyme_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0050662_!_coenzyme_binding GO:0050662]
+GO:0016857
 |
-coenzyme binding
+racemase and epimerase activity, acting on carbohydrates and derivatives
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+PMID:1821806
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001509 InterPro:IPR001509]
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
-|-
-|
-|
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
-|
-cytoplasm
-|
-|
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
 |-
 |
 |
-[[Category:GO:0009242_!_colanic_acid_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009242_!_colanic_acid_biosynthetic_process GO:0009242]
+GO:0006012
 |
-colanic acid biosynthetic process
+galactose metabolic process
 |
-[[PMID:6090411]]<ref name=PMID:6090411/>
+PMID:1821806
 |
-IMP: Inferred from Mutant Phenotype
+IDA: Inferred from Direct Assay
 |
@@ Line 283: / Line 248: @@
 P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
 |
 complete
 |-
 |
 |
-[[Category:GO:0016052_!_carbohydrate_catabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016052_!_carbohydrate_catabolic_process GO:0016052]
+GO:0005737
 |
-carbohydrate catabolic process
+cytoplasm
 |
+PMID:1821806
 |
+IDA: Inferred from Direct Assay
 |
 |
-P
+C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
-|
-[[Category:GO:0009435_!_NAD_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009435_!_NAD_biosynthetic_process GO:0009435]
-|
-NAD biosynthetic process
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
-|-
-|
-Under review
-|
-[[Category:GO:0009269_!_response_to_desiccation]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009269_!_response_to_desiccation GO:0009269]
-|
-response to desiccation
 |
 |
+complete
-|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.H46aa42291caff&page=21293&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.H46aa42291caff-->
-|
+<span id="Interactions"></span><big>'''Interactions'''</big>
-P
+<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.J46aa426b39cda-->
-|
+<!--
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+******************************************************************************************
+*
-See discussion page.
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
-|
+*
-required field missing
+****************************************************************************************** -->{{Product_interactions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aa426b39cda"  class=" tableEdit Product_interactions_table dataTable"
+|- {{table heading style}}
+!|Partner Type!!Partner!!Notes!!References!!Evidence
 |-
 |
+Protein
 |
-[[Category:GO:0042280_!_cell_surface_antigen_activity,_host-interacting]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0042280_!_cell_surface_antigen_activity,_host-interacting GO:0042280]
+Subunits of [[:Category:Complex:UDP-glucose 4-epimerase|UDP-glucose 4-epimerase]]
 |
-cell surface antigen activity, host-interacting
+could be indirect
 |
-|
 |
-|
-F
-|
-Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
-|
-required fields missing
 |-
 |
-Under review
+Protein
-|
-[[Category:GO:0042603_!_capsule]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0042603_!_capsule GO:0042603]
 |
-capsule
+rsuA<br />
 |
 |
+PMID:16606699
 |
+Experiment(s):EBI-1137880<br />
+|-
 |
-C
+Protein
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+yfcH<br />
-GalE is not located in the capsule.
-|
-required field missing
-|-
 |
 |
-[[Category:GO:0006012_!_galactose_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006012_!_galactose_metabolic_process GO:0006012]
+PMID:16606699
 |
-galactose metabolic process
+Experiment(s):EBI-1137880<br />
+|-
 |
-[[PMID:13914787]]<ref name=PMID:13914787/>
+Protein
 |
-IMP: Inferred from Mutant Phenotype
+nadE<br />
 |
 |
-P
+PMID:16606699
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Experiment(s):EBI-1137880<br />
-|
-complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.H46aa42291caff&page=21293&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.J46aa426b39cda&page=21293&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.H46aa42291caff-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.J46aa426b39cda-->
-<span id="Interactions"></span><big>'''Interactions'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.J46aa426b39cda-->
-<!--
-******************************************************************************************
-*
-*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
-*
-****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='156912'
-|- {{table heading style}}
-!Partner Type!!Partner!!Notes
-|-
-|
-Protein
-|
-Subunits of [[:Category:Complex:UDP-glucose 4-epimerase|UDP-glucose 4-epimerase]]
-|
-could be indirect
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.J46aa426b39cda&page=21293&pagename={{FULLPAGENAMEE}} edit table] || ||
-|}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.J46aa426b39cda-->
-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
@@ Line 441: / Line 345: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' {{Prettytable}} id='105868'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46a7d4273b14b"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.Q46a7d4273b14b&page=21293&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.Q46a7d4273b14b&page=21293&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.Q46a7d4273b14b-->
-{{Product_localization_help}}
 <protect><!--Localization_notes--></protect>
@@ Line 465: / Line 370: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_physical_properties_help}}
-{|{{Prettytable}}
+{|   id="T46aa426d54e5c"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Sequence
-|
+||
 [http://biocyc.org/ECOLI/sequence-aa?object=UDPGLUCEPIM-MONOMER at EcoCyc]
 <pre>MRVLVTGGSG YIGSHTCVQL LQNGHDVIIL DNLCNSKRSV LPVIERLGGK HPTFVEGDIR
@@ Line 481: / Line 391: @@
 ADASKADREL NWRVTRTLDE MAQDTWHWQS RHPQGYPD</pre>
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Length
-|
+||
-.27 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table heading style}} |pI
+!align=left {{table heading style}} |Mol. Wt
-|
+||
-.28<ref name='LIB:EcoCyc10.6'/>
+.264 kDa
 |-
-!{{table heading style}} |Extinction coefficient
+!align=left {{table heading style}} |pI
-|
+||
-- 48735 (calc based on 14 Y, 5 W, and 3 C residues)
+.3 (calculated)
 |-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.T46aa426d54e5c&page=21293&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table heading style}} |Extinction coefficient
+||
+,360 - 48,735 (calc based on 14 Y, 5 W, and 3 C residues)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.T46aa426d54e5c&page=21293&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.T46aa426d54e5c-->
-{{Product_physical_properties_help}}
-==Domains/Motifs/Modification Sites==
-<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.D46aa426db0285-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.21293.D46aa426db0285-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' {{Prettytable}} id='156914'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46aa426db0285"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-class='sortbottom'
+|-
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.D46aa426db0285&page=21293&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|
+Domain
+|
+..262
+|
+[http://pfam.janelia.org/family/PF01370 PF01370  NAD dependent epimerase/dehydratase family]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.D46aa426db0285&page=21293&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.D46aa426db0285-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.21293.D46aa426db0285--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.X46aa426e07634-->
 <!--
@@ Line 522: / Line 457: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="X46aa426e07634"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>galE
+<beststructure>
-</beststructure>
+gene=galE
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=galE&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P09147 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=galE&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P09147 PSI-PRED (P09147)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P09147 Genomes TO Protein (P09147)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.X46aa426e07634&page=21293&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.X46aa426e07634&page=21293&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.X46aa426e07634-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 556: / Line 510: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' {{Prettytable}} id='156916'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aa427e3e5b8"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.A46aa427e3e5b8&page=21293&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.A46aa427e3e5b8&page=21293&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.A46aa427e3e5b8-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 577: / Line 532: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' {{Prettytable}} id='156917'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aa427e89f16"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/49176045 GI:49176045]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_415280.3 GeneID:945354]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0002575
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=UDPGLUCEPIM-MONOMER EcoCyc:UDPGLUCEPIM-MONOMER]
+[http://www.uniprot.org/uniprot/P09147 UniProtKB/Swiss-Prot:P09147]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[[uniprot:P09147|UniProt:P09147]]
+EcoCyc:EG10362
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01370 PFAM:PF01370]
+EcoGene:EG10362
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415280 RefSeq:NP_415280]
+[http://www.ncbi.nlm.nih.gov/gene?term=945354 GeneID:945354]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P09147 ModBase:P09147]
+RegulonDB:ECK120000355
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1A9Y PDB:1A9Y]
+EchoBASE:EB0357
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.E46aa427e89f16&page=21293&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.E46aa427e89f16&page=21293&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.E46aa427e89f16-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 640: / Line 617: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
 ****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='105876'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46a7d440b0933"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
-!Name!!URL!!Comments
+!|Name!!URL!!Comments
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.M46a7d440b0933&page=21293&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21293.M46a7d440b0933&page=21293&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.21293.M46a7d440b0933-->
-{{Links_help}}
@@ Line 659: / Line 637: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006012_!_galactose metabolic process]][[Category:GO:0009242_!_colanic acid biosynthetic process]][[Category:GO:0016052_!_carbohydrate catabolic process]][[Category:GO:0009435_!_NAD biosynthetic process]][[Category:GO:0009269_!_response to desiccation]][[Category:GO:0042280_!_cell surface antigen activity, host-interacting]][[Category:GO:0030113_!_capsule (sensu Bacteria)]][[Category:Complex:UDP-glucose 4-epimerase]][[Category:Products with structures in PDB]]
+[[Category:RefGenome_Annotated_Gene]]

galE:Gene Product(s): Difference between revisions

Latest revision as of 20:29, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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