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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

References |

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Standard Name	yceM
Gene Synonym(s)	mviM, ECK1053, b1068, JW1055^[1]^[2], JW1055, mviS
Product Desc.	predicted oxidoreductase, NAD(P)-binding Rossmann-fold domain^[3]^[2] Putative oxidoreductase, function unknown^[4]
Product Synonyms(s)	predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain^[1], B1068^[3]^[1], YceM^[3]^[1], MviM^[3]^[1] , ECK1053, JW1055, mviM, mviS, b1068
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s):
Regulation/Activity
Quick Links
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Notes

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yceM was identified as one of two ORFs adjacent to the flg locus in a region originally named mviS, then renamed mviN and mviM when sequenced; mviMN was thought to be required for mouse virulence in Salmonella, but the mviMN deletion in ST39 also removed flgM (Carsiotis, 1989). flgM was later shown to be able to complement the mviS phenotype, and thus flgM is the real mouse virulence gene mviS in this region of the Salmonella chromosome (Schmitt, 1994).^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	yceM
Mnemonic	Systematic nomenclature
Synonyms	mviM, ECK1053, b1068, JW1055^[1]^[2], JW1055, mviS
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	24.27 minutes	MG1655: 1126029..1126952 <gbrowseImage> name=NC_000913:1126029..1126952 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
BW2952		NC_012759: 1029954..1030877 <gbrowseImage> name=NC_012759:1029954..1030877 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 1128383..1129306 <gbrowseImage> name=NC_007779:1128383..1129306 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource

Resource Type

Source

Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

E4H10S

Kohara Phage

Genobase

PMID:3038334

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6560	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13879	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003156	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:945204	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3638	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003627	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	MviM
Synonyms	predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain^[1], B1068^[3]^[1], YceM^[3]^[1], MviM^[3]^[1] , ECK1053, JW1055, mviM, mviS, b1068
Product description	predicted oxidoreductase, NAD(P)-binding Rossmann-fold domain^[3]^[2] Putative oxidoreductase, function unknown^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016040	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005488	binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016040	F	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004104	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR016040	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009405	pathogenesis	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0843	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000683	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016491	oxidoreductase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004104	F	Seeded from EcoCyc (v14.0)	complete
	GO:0055114	oxidation reduction	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004104	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	astE	PMID:16606699	Experiment(s):EBI-1138746
Protein	hisG	PMID:16606699	Experiment(s):EBI-1138746
Protein	ydcS	PMID:16606699	Experiment(s):EBI-1138746
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MKKLRIGVVG LGGIAQKAWL PVLAAASDWT LQGAWSPTRA KALPICESWR IPYADSLSSL AASCDAVFVH SSTASHFDVV STLLNAGVHV CVDKPLAENL RDAERLVELA ARKKLTLMVG FNRRFAPLYG ELKTQLATAA SLRMDKHRSN SVGPHDLYFT LLDDYLHVVD TALWLSGGKA SLDGGTLLTN DAGEMLFAEH HFSAGPLQIT TCMHRRAGSQ RETVQAVTDG ALIDITDMRE WREERGQGVV HKPIPGWQST LEQRGFVGCA RHFIECVQNQ TVPQTAGEQA VLAQRIVDKI WRDAMSE
Length	307
Mol. Wt	33.68 kDa
pI	7.3 (calculated)
Extinction coefficient	49,960 - 50,710 (calc based on 4 Y, 8 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	4..121	PF01408 Oxidoreductase family, NAD-binding Rossmann fold	PMID:19920124
Domain	132..227	PF02894 Oxidoreductase family, C-terminal alpha/beta domain	PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yceM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16129031	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945204	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003627	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P75931	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6560	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13879	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945204	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003156	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3638	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MG1655	154	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	122	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	176	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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File:.jpg

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1126009..1126049 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1068 (EcoliWiki Page)	NCBI GEO profiles for yceM
microarray	GenExpDB:b1068 (EcoliWiki Page)	Summary of data for yceM from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to yceM Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6560	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3638	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1068
EcoGene	EcoGene:EG13879	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003156	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003627	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Shigella flexneri	MVIM	From SHIGELLACYC
E. coli O157	MVIM	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF02894 Oxidoreductase family, C-terminal alpha/beta domain
Pfam (EcoliWiki Page)	PF01408 Oxidoreductase family, NAD-binding Rossmann fold
Superfamily (EcoliWiki Page)	SUPERFAMILY:51735
Panther (EcoliWiki Page)	PTHR22604:SF8
Superfamily (EcoliWiki Page)	SUPERFAMILY:55347
EcoCyc	EcoCyc:G6560	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13879	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003156	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3638	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003627	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

yceM:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to yceM Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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