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Gene |

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Standard Name	ycbZ
Gene Synonym(s)	b0955; ECK0946; JW0938^[1], ECK0946, JW0938, b0955
Product Desc.	predicted peptidase; putative ATP-dependent protease; putative enzyme; Not classified
Product Synonyms(s)	, ECK0946, JW0938, b0955
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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<protect><protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	ycbZ
Mnemonic
Synonyms	b0955; ECK0946; JW0938^[1], ECK0946, JW0938, b0955
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Notes

Location(s) and DNA Sequence

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<protect><protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655		NC_000913: 1015762..1017522	GBrowse (MG1655)	FASTA Dump
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Notes

Sequence Features

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<protect><protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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<protect><protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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<protect><protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
E2E5	Kohara Phage	Genobase	PMID:3038334
9B10	Kohara Phage	Genobase	PMID:3038334
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Notes

Accessions in Other Databases

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<protect><protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6493	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13718	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003093	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:945569	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3482	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003233	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

<protect><protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	YcbZ
Synonyms	, ECK0946, JW0938, b0955
Product description	predicted peptidase; putative ATP-dependent protease; putative enzyme; Not classified
EC number (for enzymes)
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Notes

Function

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Gene Ontology

<protect><protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions

<protect><protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

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Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties

<protect><protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MTITKLAWRD LVPDTDSYQE IFAQPHLIDE NDPLFSDTQP RLQFALEQLL HTRASSSFML AKAPEESEYL NLIANAARTL QSDAGQLVGG HYEVSGHSIR LRHAVSADDN FATLTQVVAA DWVEAEQLFG CLRQFNGDIT LQPGLVHQAN GGILIISLRT LLAQPLLWMR LKNIVNRERF DWVAFDESRP LPVSVPSMPL KLKVILVGER ESLADFQEME PELSEQAIYS EFEDTLQIVD AESVTQWCRW VTFTARHNHL PAPGADAWPI LIREAARYTG EQETLPLSPQ WILRQCKEVA SLCDGDTFSG EQLNLMLQQR EWREGFLAER MQDEILQEQI LIETEGERIG QINALSVIEF PGHPRAFGEP SRISCVVHIG DGEFTDIERK AELGGNIHAK GMMIMQAFLM SELQLEQQIP FSASLTFEQS YSEVDGDSAS MAELCALISA LADVPVNQSI AITGSVDQFG RAQPVGGLNE KIEGFFAICQ QRELTGKQGV IIPTANVRHL SLHSELVKAV EEGKFTIWAV DDVTDALPLL LNLVWDGEGQ TTLMQTIQER IAQASQQEGR HRFPWPLRWL NWFIPN
Length	586
Mol. Wt	65.819 kDa
pI	4.6 (calculated)
Extinction coefficient	85,940 - 86,815 (calc based on 6 Y, 14 W, and 7 C residues)
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Domains/Motifs/Modification Sites

<protect><protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
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<motif_map/>

Structure

<protect><protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models
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Structure figures

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Notes

Gene Product Resources

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<protect><protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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<protect><protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128922	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945569	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003233	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P75867	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6493	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13718	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945569	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003093	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3482	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

Intracellular Levels

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<protect><protect> See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MG1655	700	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	131	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	312	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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Notes

Turnover and Regulation of Turnover

Notes

Experimental

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Mutations Affecting Expression

<protect><protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies

<protect><protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
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Expression Resources

<protect><protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to ycbZ Expression

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<protect><protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6493	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13718	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003093	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3482	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003233	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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<protect><protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
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Do-It-Yourself Web Tools

Notes

Families

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<protect><protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database	Accession	Notes
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Notes

Links

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Name	URL	Comments
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↑ ^1.0 ^1.1 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:Riley_2006-1] 1.0 ^1.1 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[1]

ycbZ:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Gene Ontology

Interactions

Notes

Localization

Notes

Structure and Physical Properties

Physical Properties

Domains/Motifs/Modification Sites

Structure

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Intracellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Mutations Affecting Expression

Expression Studies

Expression Resources

Notes

Accessions Related to ycbZ Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

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