trpE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TrpE

Synonyms

component I of anthranilate synthase[1], B1264[2][1], TryD[2][1], TrpE[2][1], α subunit[2][1] , anth, ECK1258, JW1256, tryD, tryp-4, b1264

Product description

anthranilate synthase component I[2][3];

Component of anthranilate synthase[2][3]

Anthranilate synthase component I[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0000162

tryptophan biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0822

P

Seeded from EcoCyc (v14.0)

complete

GO:0004049

anthranilate synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005257

F

Seeded from EcoCyc (v14.0)

complete

GO:0004049

anthranilate synthase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.3.27

F

Seeded from EcoCyc (v14.0)

complete

GO:0004049

anthranilate synthase activity

PMID:4886289[5]

IDA: Inferred from Direct Assay

F

Table 1

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

TrpD

PMID:4886290[6]

zone centrifugation

Protein

acnB

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

ompL

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

insI1

PMID:16606699[7]

Experiment(s):EBI-1139361, EBI-1139361, EBI-1139361

Protein

fusA

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rpsI

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

htpG

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

lacZ

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rpsC

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

dnaK

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

mukB

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rpsA

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rplD

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rpsB

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

nadE

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

groL

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rplF

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

aceE

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

rplB

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

nuoE

PMID:16606699[7]

Experiment(s):EBI-1139361

Protein

Subunits of anthranilate synthase


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQTQKPTLEL LTCEGAYRDN PTALFHQLCG DRPATLLLES ADIDSKDDLK SLLLVDSALR
ITALGDTVTI QALSGNGEAL LALLDNALPA GVESEQSPNC RVLRFPPVSP LLDEDARLCS
LSVFDAFRLL QNLLNVPKEE REAMFFGGLF SYDLVAGFED LPQLSAENNC PDFCFYLAET
LMVIDHQKKS TRIQASLFAP NEEEKQRLTA RLNELRQQLT EAAPPLPVVS VPHMRCECNQ
SDEEFGGVVR LLQKAIRAGE IFQVVPSRRF SLPCPSPLAA YYVLKKSNPS PYMFFMQDND
FTLFGASPES SLKYDATSRQ IEIYPIAGTR PRGRRADGSL DRDLDSRIEL EMRTDHKELS
EHLMLVDLAR NDLARICTPG SRYVADLTKV DRYSYVMHLV SRVVGELRHD LDALHAYRAC
MNMGTLSGAP KVRAMQLIAE AEGRRRGSYG GAVGYFTAHG DLDTCIVIRS ALVENGIATV
QAGAGVVLDS VPQSEADETR NKARAVLRAI ATAHHAQETF
Length

520

Mol. Wt

57.495 kDa

pI

5.3 (calculated)

Extinction coefficient

20,860 - 22,360 (calc based on 14 Y, 0 W, and 12 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

17..193

PF04715 Anthranilate synthase component I, N terminal region

PMID:19920124[8]

Domain

241..502

PF00425 chorismate binding enzyme

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=trpE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129225

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945846

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004244

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P00895

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11028

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11028

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945846

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001017

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1021

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Ito, J et al. (1969) Anthranilate synthetase, an enzyme specified by the tryptophan operon of Escherichia coli: purification and characterization of component I. J. Bacteriol. 97 725-33 PubMed
  6. ↑ Ito, J & Yanofsky, C (1969) Anthranilate synthetase, an enzyme specified by the tryptophan operon of Escherichia coli: Comparative studies on the complex and the subunits. J. Bacteriol. 97 734-42 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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