selD:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
selD |
|---|---|
| Mnemonic |
Selenium |
| Synonyms |
ECK1762, b1764, JW1753, fdhB[1], fdhB |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
39.77 minutes |
MG1655: 1846032..1844989 |
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NC_012967: 1825236..1824193 |
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NC_012759: 1737048..1738091 |
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W3110 |
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W3110: 1849722..1848679 |
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DH10B: 1936603..1935560 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔselD (Keio:JW1753) |
deletion |
deletion |
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selD::Tn5KAN-2 (FB20452) |
Insertion at nt 193 in Plus orientation |
contains pKD46 | |||||
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selDC19S |
C19S |
No loss of activity |
seeded from UniProt:P16456 | ||||
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selDH13N |
H13N |
No loss of activity |
seeded from UniProt:P16456 | ||||
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selDC17S |
C17S |
Complete loss of activity |
seeded from UniProt:P16456 | ||||
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selDG18V |
G18V |
Partial loss of activity |
seeded from UniProt:P16456 | ||||
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selDK20R |
K20R |
Marked loss of activity |
seeded from UniProt:P16456 | ||||
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selDK20Q |
K20Q |
Complete loss of activity |
seeded from UniProt:P16456 | ||||
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selD204(CamR)::cat |
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ΔselD762::kan |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1753 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGCGAGAACTCGATTCGTTT Primer 2:CCACGAATCTCAACCATGGCACG | |
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Kohara Phage |
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|
Linked marker |
est. P1 cotransduction: 65% [8] | ||
|
Linked marker |
est. P1 cotransduction: 39% [8] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ Leinfelder, W et al. (1990) In vitro synthesis of selenocysteinyl-tRNA(UCA) from seryl-tRNA(UCA): involvement and characterization of the selD gene product. Proc. Natl. Acad. Sci. U.S.A. 87 543-7 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
