rcsB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RcsB

Synonyms

DNA-binding response regulator in two-component regulatory system with RcsC and YojN[1], B2217[2][1], RcsB[2][1], positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)[2][1], regulator protein RcsB[2][1], unphosphorylated regulator protein RcsB[2][1], unmodified regulator protein RcsB[2][1] , ECK2210, JW2205, viaA, b2217

Product description

RcsB[2][3];

Component of RcsB[2][3]

Positive regulatory gene for capsule (colanic acid) synthesis; when overexpressed, restores ftsZ84 growth on low-salt medium[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000156

two-component response regulator activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

F

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

P

Seeded from EcoCyc (v14.0)

complete

GO:0000160

two-component signal transduction system (phosphorelay)

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0902

P

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001789

P

Seeded from EcoCyc (v14.0)

complete

GO:0043565

sequence-specific DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000792

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of RcsB

could be indirect

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

glnB

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-879136, EBI-882754

Protein

rpsC

PMID:15690043[5]

Experiment(s):EBI-879136, EBI-882754

Protein

rpsD

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

rpsJ

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

rpsU

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

yojN

PMID:15690043[5]

Experiment(s):EBI-879136

Protein

yfaW

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

yfaY

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

ygfK

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

crp

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

lldP

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

tilS

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

mgtA

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

polA

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

prmA

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

rplE

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

rplI

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

rplS

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

rpmB

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

rpoA

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

yagA

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

ssuD

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

etk

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

gadE

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

yhjQ

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

gfcD

PMID:15690043[5]

Experiment(s):EBI-882754

Protein

yeaO

PMID:16606699[6]

Experiment(s):EBI-1142206

Protein

ygfK

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

tufB

PMID:19402753[7]

MALDI(Z-score):18.961569

Protein

rpmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

prmA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):28.025444

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):7.187864

Protein

rplA

PMID:19402753[7]

MALDI(Z-score):24.686073

Protein

rpsD

PMID:19402753[7]

MALDI(Z-score):31.453572

Protein

rhmD

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ssuD

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

lldP

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

tilS

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

etk

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yagA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

mgtA

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

gfcD

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

gadE

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

rcsD

PMID:19402753[7]

MALDI(Z-score):18.897267

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNNMNVIIAD DHPIVLFGIR KSLEQIEWVN VVGEFEDSTA LINNLPKLDA HVLITDLSMP
GDKYGDGITL IKYIKRHFPS LSIIVLTMNN NPAILSAVLD LDIEGIVLKQ GAPTDLPKAL
AALQKGKKFT PESVSRLLEK ISAGGYGDKR LSPKESEVLR LFAEGFLVTE IAKKLNRSIK
TISSQKKSAM MKLGVENDIA LLNYLSSVTL SPADKD
Length

216

Mol. Wt

23.671 kDa

pI

7.5 (calculated)

Extinction coefficient

11,460 (calc based on 4 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

148..205

PF00196 Bacterial regulatory proteins, luxR family

PMID:19920124[8]

Domain

6..121

PF00072 Response regulator receiver domain

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rcsB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130154

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947441

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007333

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P69407

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10821

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10821

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947441

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000812

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0814

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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