pssA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PssA

Synonyms

phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)[1], B2585[2][1], Pss[2][1], PssA[2][1] , ECK2583, JW2569, pss, b2585

Product description

PssA[2][3];

Component of phosphatidylserine synthase[2][3]

Phosphatidylserine synthase[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of phosphatidylserine synthase

could be indirect

Protein

pnp

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

rpsC

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

rpsD

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

ycbY

PMID:15690043[5]

Experiment(s):EBI-887767

Protein

yfiF

PMID:15690043[5]

Experiment(s):EBI-887767, EBI-879491

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rplW

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rpsU

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

ppiD

PMID:15690043[5]

Experiment(s):EBI-893445

Protein

rpsD

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

yghW

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

ppx

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

rpsM

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

rplA

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

rplQ

PMID:16606699[6]

Experiment(s):EBI-1143395

Protein

ppiD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[7]

MALDI(Z-score):24.335358

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsU

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):3.277672

Protein

rlmL

PMID:19402753[7]

MALDI(Z-score):26.896684

Protein

rpsD

PMID:19402753[7]

MALDI(Z-score):33.362536

Protein

rpsC

PMID:19402753[7]

MALDI(Z-score):28.422938

Protein

yfiF

PMID:19402753[7]

MALDI(Z-score):34.756829

Protein

rplL

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MMLSKFKRNK HQQHLAQLPK ISQSVDDVDF FYAPADFRET LLEKIASAKQ RICIVALYLE
QDDGGKGILN ALYEAKRQRP ELDVRVLVDW HRAQRGRIGA AASNTNADWY CRMAQENPGV
DVPVYGVPIN TREALGVLHF KGFIIDDSVL YSGASLNDVY LHQHDKYRYD RYHLIRNRKM
SDIMFEWVTQ NIMNGRGVNR LDDVNRPKSP EIKNDIRLFR QELRDAAYHF QGDADNDQLS
VTPLVGLGKS SLLNKTIFHL MPCAEQKLTI CTPYFNLPAI LVRNIIQLLR EGKKVEIIVG
DKTANDFYIP EDEPFKIIGA LPYLYEINLR RFLSRLQYYV NTDQLVVRLW KDDDNTYHLK
GMWVDDKWML ITGNNLNPRA WRLDLENAIL IHDPQLELAP QREKELELIR EHTTIVKHYR
DLQSIADYPV KVRKLIRRLR RIRIDRLISR IL
Length

452

Mol. Wt

52.934 kDa

pI

9.3 (calculated)

Extinction coefficient

68,300 - 68,800 (calc based on 20 Y, 7 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

352..379

PF00614 Phospholipase D Active site motif

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pssA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111464

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947059

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008510

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P23830

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10781

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10781

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947059

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000772

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0774

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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