nagE:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
nagE |
|---|---|
| Mnemonic |
N-Acetylglucosamine |
| Synonyms |
ECK0667, b0679, JW0665, pstN[1], pstN, ptsN |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
15.16 minutes |
MG1655: 703167..705113 |
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NC_012967: 686039..687985 |
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NC_012759: 605927..607873 |
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W3110 |
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W3110: 704366..706312 |
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DH10B: 755759..757705 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
nagE(del) (Keio:JW0665) |
deletion |
deletion |
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nagE467 |
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nagE728(del)::kan |
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nagE |
Resistant to |
Resistance to Deoxy(2)-2-iodoacetamideoglucose. |
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nagE in strain LR2-163, LR-12, LR-29 |
Resistant to |
Resistance to Streptozotocin |
STRAINS: LR2-163, LR-12, LR-29 |
table 2 | |||
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nagE in strain LR2-163, LR-12, LR-29 |
Sensitivity to |
Sensitive to D-mannose |
table 2 | ||||
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nagE |
Resistant to |
Resistance to Iodoacetylglucosamine resistance |
Table 4 | ||||
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0665 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAATATTTTAGGTTTTTTCCA Primer 2:CCCTTTTTGATTTCATACAGCGG | |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 92% [9] | ||
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Linked marker |
est. P1 cotransduction: 1% [9] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Jones-Mortimer, MC & Kornberg, HL (1980) Amino-sugar transport systems of Escherichia coli K12. J. Gen. Microbiol. 117 369-76 PubMed
- ↑ 5.0 5.1 Lengeler, J (1980) Characterisation of mutants of Escherichia coli K12, selected by resistance to streptozotocin. Mol. Gen. Genet. 179 49-54 PubMed
- ↑ White, RJ & Kent, PW (1970) An examination of the inhibitory effects of N-iodoacetylglucosamine on Escherichia coli and isolation of resistant mutants. Biochem. J. 118 81-7 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 8.0 8.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
