lplA:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

lplA

Mnemonic

Lipoate-protein ligase

Synonyms

ECK4378, b4386, JW4349, slr, yjjF[1], yjjF

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

99.6 minutes, 99.6 minutes 

MG1655: 4622140..4621124
<gbrowseImage> name=NC_000913:4621124..4622140 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4612331..4611315
<gbrowseImage> name=NC_012967:4611315..4612331 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4559608..4560624
<gbrowseImage> name=NC_012759:4559608..4560624 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4628797..4627781
<gbrowseImage> name=NC_007779:4627781..4628797 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4668602..4667586
<gbrowseImage> name=NC_010473:4667586..4668602 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4621127

Edman degradation

PMID:8206909[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔlplA (Keio:JW4349)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC11104[4]

lplAR141A

R141A

More than 10-fold reduction in Vmax

seeded from UniProt:P32099

lplAG74S

G74S

(in lplA1 or slr1; selenolipoate resistance mutation)

Strain variation; seeded from UniProt:P32099

lplAS73A

S73A

20-fold decrease in affinity for ATP

seeded from UniProt:P32099

ΔlplA782::kan

PMID:16738554[3]

CGSC:101686


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW4349

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCTCCACATTACGCCTGCTCAT

Primer 2:CCtCTTACAGCCCCCGCCATCCA

15C9

Kohara Phage

Genobase

PMID:3038334[6]

12A4

Kohara Phage

Genobase

PMID:3038334[6]

mdoB202::Tn10

Linked marker

CAG18430 = CGSC7488[4]

est. P1 cotransduction: 34% [7]
Synonyms:zjj-202::Tn10, zji-202::Tn10

thrA34::Tn10

Linked marker

CAG18442 = CGSC7320[4]

est. P1 cotransduction: 51% [7]
Synonyms:thr-34::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11796

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11796

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001730

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944865

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1744

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014385

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. Morris, TW et al. (1994) Identification of the gene encoding lipoate-protein ligase A of Escherichia coli. Molecular cloning and characterization of the lplA gene and gene product. J. Biol. Chem. 269 16091-100 PubMed
  3. 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. 6.0 6.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  7. 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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