insH-11:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
insH-11 |
|---|---|
| Mnemonic | |
| Synonyms |
insH, ECK0261, b0259, JW0250, trs5, yi52_1, trs5-1, b0552, JW0540, yi52_2, trs5-2, b0656, JW0652, yi52_3, trs5-3, b1331, JW1324, yi52_4, trs5-4, b1370, JW1363, yi52_5, trs5-5, b1994, JW1972, yi52_6, trs5-6, b2030, JW2014, yi52_7, trs5-7, b2192, JW2179, yi52_8, trs5-8, b2982, JW2949, yi52_9, trs5-9, b3218, JW3185, trs5-10, yi52_, b3505, JW3472, trs5-11, unique to W3110, JW5951, JW5936, JW5935, JW5928, JW5914, JW5895, JW1882, insH-1, insH-2, insH-3, insH-4, insH-5, insH-6, insH-7, insH-8, insH-9, insH-10, yi52_10, yi52_11[1][2][3] |
| edit table |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
5.89 minutes |
MG1655: 274341..273325 |
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NC_012759: 1284949..1285965 |
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NC_012759: 1288499..1289526 |
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NC_012759: 1317829..1318809 |
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NC_012759: 1956812..1957828 |
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NC_012759: 1992402..1993418 |
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NC_012759: 2172892..2173908 |
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NC_012759: 273324..274340 |
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NC_012759: 3015348..3016364 |
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NC_012759: 3250872..3251888 |
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NC_012759: 3538699..3539715 |
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NC_012759: 476720..477736 |
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NC_012759: 589980..590996 |
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W3110 |
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W3110: 274341..273325 |
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MG1655 |
12.37 minutes |
MG1655: 574976..573960 |
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W3110 |
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W3110: 574976..573960 |
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MG1655 |
14.81 minutes |
MG1655: 688236..687220 |
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W3110 |
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W3110: 689435..688419 |
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MG1655 |
30.05 minutes |
MG1655: 1394100..1395116 |
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W3110 |
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W3110: 1397790..1398806 |
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MG1655 |
30.73 minutes |
MG1655: 1426750..1425770 |
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W3110 |
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W3110: 1430440..1429460 |
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MG1655 |
44.49 minutes |
MG1655: 2065345..2064329 |
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W3110 |
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W3110: 2069458..2068442 |
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MG1655 |
45.26 minutes |
MG1655: 2100935..2099919 |
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W3110 |
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W3110: 2105048..2104032 |
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MG1655 |
49.29 minutes |
MG1655: 2288103..2287087 |
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W3110 |
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W3110: 2293415..2292399 |
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MG1655 |
67.42 minutes |
MG1655: 3128200..3129216 |
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W3110 |
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W3110: 3128834..3129850 |
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MG1655 |
72.5 minutes |
MG1655: 3364740..3363724 |
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W3110 |
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W3110: 3366573..3365557 |
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MG1655 |
78.67 minutes |
MG1655: 3651221..3650205 |
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W3110 |
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W3110: 3987217..3988233 |
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W3110 |
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W3110: 4310431..4311411 |
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W3110 |
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W3110: 3750659..3751639 |
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W3110 |
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W3110: 3746979..3747959 |
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W3110 |
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W3110: 3261202..3262182 |
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W3110 |
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W3110: 2177051..2178031 |
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W3110 |
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W3110: 654281..655261 |
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W3110 |
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W3110: 1981371..1980355 |
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DH10B: 3748966..3747950 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
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Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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zhg-50::Tn10 |
Linked marker |
est. P1 cotransduction: 5% [7] | |
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zic-4901::Tn10 |
Linked marker |
est. P1 cotransduction: % [7] | |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
