insE-5:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

insE-5

Mnemonic
Synonyms

insE, ECK0298, b0298, JW5036, insE1, b0373, JW5050, insE2, b0540, JW5074, insE3, b1027, JW5144, insE4, b2088, JW5341, insE5, insE-1, insE-2, insE-3, insE-4[1][2][3]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

6.78 minutes 

MG1655: 314506..314814
<gbrowseImage> name=NC_000913:314506..314814 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2882765..2883073
<gbrowseImage> name=NC_012967:2882765..2883073 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1615527..1615835
<gbrowseImage> name=NC_012967:1615527..1615835 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1607973..1608281
<gbrowseImage> name=NC_012967:1607973..1608281 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1442692..1443000
<gbrowseImage> name=NC_012967:1442692..1443000 source=REL606 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1111423..1111731
<gbrowseImage> name=NC_012967:1111423..1111731 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2060734..2061042
<gbrowseImage> name=NC_012759:2060734..2061042 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 294585..294893
<gbrowseImage> name=NC_012759:294585..294893 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 468816..469124
<gbrowseImage> name=NC_012759:468816..469124 source=BW2952 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 998105..998413
<gbrowseImage> name=NC_012759:998105..998413 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 314506..314814
<gbrowseImage> name=NC_007779:314506..314814 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

8.45 minutes 

MG1655: 392134..391826
<gbrowseImage> name=NC_000913:391826..392134 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 392134..391826
<gbrowseImage> name=NC_007779:391826..392134 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

12.2 minutes 

MG1655: 566056..566364
<gbrowseImage> name=NC_000913:566056..566364 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 566056..566364
<gbrowseImage> name=NC_007779:566056..566364 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

23.59 minutes 

MG1655: 1094669..1094361
<gbrowseImage> name=NC_000913:1094361..1094669 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1095868..1095560
<gbrowseImage> name=NC_007779:1095560..1095868 source=W3110 preset=GeneLocation </gbrowseImage>

MG1655

46.73 minutes 

MG1655: 2168251..2168559
<gbrowseImage> name=NC_000913:2168251..2168559 source=ecoli preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2172364..2172672
<gbrowseImage> name=NC_007779:2172364..2172672 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2259259..2259567
<gbrowseImage> name=NC_010473:2259259..2259567 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

3E3

Kohara Phage

Genobase

PMID:3038334[5]

9G4

Kohara Phage

Genobase

PMID:3038334[5]

6E2

Kohara Phage

Genobase

PMID:3038334[5]

1A10

Kohara Phage

Genobase

PMID:3038334[5]

2C4

Kohara Phage

Genobase

PMID:3038334[5]

1E12

Kohara Phage

Genobase

PMID:3038334[5]

9G7

Kohara Phage

Genobase

PMID:3038334[5]

1H4

Kohara Phage

Genobase

PMID:3038334[5]

10H4

Kohara Phage

Genobase

PMID:3038334[5]

zef-3129::Tn10

Linked marker

CAG12099 = CGSC7397[6]

est. P1 cotransduction: % [7]
Synonyms:zee-3129::Tn10

zbd-3104::Tn10

Linked marker

CAG12021 = CGSC7344[6]

est. P1 cotransduction: 77% [7]
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

ECOCYC:G6168

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG40005

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944952

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6224

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946900

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6296

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945759

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6534

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945584

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G7125

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946616

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  6. 6.0 6.1 CGSC: The Coli Genetics Stock Center
  7. 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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