insC-6:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
insC-6 |
|---|---|
| Mnemonic | |
| Synonyms |
insC, ECK0357, b0360, JW0351, yi21-1, b1403, JW1400, yi21-2, b1997, JW1978, yi21-3, b2861, JW2829, yi21-4, b3044, JW3012, yi21-5, b4272, JW4229, yi21-6, unique to W3110, JW5934, JW5919, JW5902, JW5900, insC-1, insC-2, insC-3, insC-4, insC-5[1][2][3] |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
8.2 minutes |
MG1655: 380530..380940 |
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NC_012759: 3431849..3432214 |
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NC_012759: 2798105..2798470 |
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NC_012759: 1358867..1359232 |
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NC_012759: 1960322..1960687 |
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NC_012759: 283334..283699 |
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NC_012759: 2882405..2882770 |
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NC_012759: 3071357..3071722 |
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NC_012759: 4435030..4435395 |
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W3110 |
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W3110: 380530..380940 |
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MG1655 |
31.61 minutes |
MG1655: 1467218..1466808 |
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W3110 |
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W3110: 1470908..1470498 |
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MG1655 |
44.57 minutes |
MG1655: 2068249..2067839 |
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W3110 |
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W3110: 2072362..2071952 |
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MG1655 |
64.56 minutes |
MG1655: 2995667..2995257 |
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W3110 |
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W3110: 2996301..2995891 |
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MG1655 |
68.63 minutes |
MG1655: 3184164..3184574 |
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W3110 |
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W3110: 3184798..3185208 |
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MG1655 |
96.91 minutes, 96.91 minutes |
MG1655: 4496250..4496660 |
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W3110 |
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W3110: 4502907..4503317 |
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W3110 |
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W3110: 3744172..3743807 |
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W3110 |
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W3110: 2322033..2321668 |
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W3110 |
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W3110: 1301130..1301495 |
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W3110 |
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W3110: 1106861..1106496 |
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DH10B: 4598058..4598468 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
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Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 9% [7] | ||
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Linked marker |
est. P1 cotransduction: % [7] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
