insA-7:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
insA-7 |
|---|---|
| Mnemonic | |
| Synonyms |
insA, ECK0023, b0022, JW0021, b0265, JW0257, b0275, JW0269, b1894, unique to MG1655, b3444, JW3408, b4294, JW4254, b4516, JW0971, unique to W3110, JW2286, insA-1, insA-2, insA-3, insA-4, insA-5, insA-6[1][2][3] |
| edit table |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
0.44 minutes |
MG1655: 20508..20233 |
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NC_012967: 4522283..4522008 |
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NC_012967: 4506054..4505779 |
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NC_012967: 4503834..4503559 |
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NC_012967: 3741910..3741635 |
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NC_012967: 3434174..3433899 |
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NC_012967: 3024657..3024382 |
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NC_012967: 2822899..2822624 |
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NC_012967: 241587..241312 |
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NC_012967: 2682938..2682663 |
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NC_012967: 377461..377186 |
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NC_012967: 353976..353701 |
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NC_012967: 263122..262847 |
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NC_012967: 4551009..4550734 |
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NC_012967: 634690..634415 |
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NC_012967: 547644..547369 |
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NC_012967: 590267..589992 |
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NC_012967: 619829..619554 |
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NC_012967: 2618359..2618084 |
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NC_012967: 2408154..2407879 |
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NC_012967: 2263452..2263177 |
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NC_012967: 2143776..2143501 |
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NC_012967: 2128930..2128655 |
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NC_012967: 2035038..2034763 |
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NC_012967: 1973602..1973327 |
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NC_012967: 1460490..1460215 |
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NC_012967: 1323051..1322776 |
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NC_012967: 1193945..1193670 |
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NC_012967: 23621..23346 |
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NC_012759: 20233..20508 |
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NC_012759: 3470000..3470275 |
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NC_012759: 4455285..4455560 |
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NC_012759: 952024..952299 |
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W3110 |
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W3110: 20508..20233 |
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MG1655 |
6.01 minutes |
MG1655: 279099..278824 |
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W3110 |
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W3110: 279099..278824 |
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MG1655 |
6.26 minutes |
MG1655: 290570..290295 |
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W3110 |
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W3110: 290570..290295 |
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MG1655 |
42.61 minutes |
MG1655: 1977239..1976964 |
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MG1655 |
77.19 minutes, 77.19 minutes |
MG1655: 3581506..3581781 |
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W3110 |
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W3110: 4056932..4056657 |
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MG1655 |
97.35 minutes |
MG1655: 4516550..4516825 |
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W3110 |
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W3110: 4523207..4523482 |
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MG1655 |
22.61 minutes |
MG1655: 1049056..1049331 |
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W3110 |
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W3110: 1050255..1050530 |
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W3110 |
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W3110: 2412170..2411895 |
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DH10B: 4618358..4618633 |
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| edit table |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 1% [7] | ||
|
Linked marker |
est. P1 cotransduction: 1% [7] | ||
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 6.0 6.1 CGSC: The Coli Genetics Stock Center
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
