glnB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

GlnB

Synonyms

regulatory protein P-II for glutamine synthetase[1], B2553[2][1],[protein PII][2], uridylyl-[protein PII][2][1] , ECK2550, JW2537, b2553

Product description

PII[2][3], PII-UMP[2][3],

Component of PII[2][3]


PII regulatory protein for glutamine synthase; potent activator of NRII/GlnL/NtrB phosphatase and inhibitor of NRII autophosphorylation; activates adenylation of GlnA by GlnE[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of PII

could be indirect

Protein

rpoB

PMID:15690043[5]

Experiment(s):EBI-887634

Protein

tig

PMID:15690043[5]

Experiment(s):EBI-887634

Protein

yjgD

PMID:15690043[5]

Experiment(s):EBI-887025

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1143235

Protein

rpsB

PMID:16606699[6]

Experiment(s):EBI-1143235

Protein

adk

PMID:16606699[6]

Experiment(s):EBI-1143235

Protein

nadE

PMID:16606699[6]

Experiment(s):EBI-1143235

Protein

ybiA

PMID:16606699[6]

Experiment(s):EBI-1143235

Protein

rplA

PMID:16606699[6]

Experiment(s):EBI-1143235

Protein

rraB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753[7]

MALDI(Z-score):38.036888

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKIDAIIKP FKLDDVREAL AEVGITGMTV TEVKGFGRQK GHTELYRGAE YMVDFLPKVK
IEIVVPDDIV DTCVDTIIRT AQTGKIGDGK IFVFDVARVI RIRTGEEDDA AI
Length

112

Mol. Wt

12.425 kDa

pI

5.0 (calculated)

Extinction coefficient

2,980 - 3,105 (calc based on 2 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

4..105

PF00543 Nitrogen regulatory protein P-II

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=glnB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130478

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947016

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008398

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9Z1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10384

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10384

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947016

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000377

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0379

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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