ghrB:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ghrB

Mnemonic

Glyoxylate/Hydroxypyruvate Reductase

Synonyms

tiaE, ECK3540, b3553, JW5656, tkrA, yiaE[1][2], yiaE

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

80.08 minutes 

MG1655: 3715333..3716307
<gbrowseImage> name=NC_000913:3715333..3716307 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3647768..3648742
<gbrowseImage> name=NC_012967:3647768..3648742 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3603659..3604633
<gbrowseImage> name=NC_012759:3603659..3604633 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3923105..3922131
<gbrowseImage> name=NC_007779:3922131..3923105 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3715333

Edman degradation

PMID:9298646[3]
PMID:12639950[4]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

yiaE::Tn5KAN-I-SceI (FB21276)

Insertion at nt 392 in Plus orientation

PMID:15262929[5]

E. coli Genome Project:FB21276

contains pKD46

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[6]

Status:

Primer 1:

Primer 2:

9F6

Kohara Phage

Genobase

PMID:3038334[7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG12272

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12272

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002153

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948074

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2181

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011604

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  4. Wu, J & Woodard, RW (2003) Escherichia coli YrbI is 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase. J. Biol. Chem. 278 18117-23 PubMed
  5. Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  6. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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