ftsY:Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ftsY

Mnemonic

Filamentation, temperature sensitive

Synonyms

ECK3448, b3464, JW3429[1], JW3429

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

77.61 minutes 

MG1655: 3602266..3600773
<gbrowseImage> name=NC_000913:3600773..3602266 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3534931..3533435
<gbrowseImage> name=NC_012967:3533435..3534931 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3489267..3490760
<gbrowseImage> name=NC_012759:3489267..3490760 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4036172..4037665
<gbrowseImage> name=NC_007779:4036172..4037665 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3700011..3698518
<gbrowseImage> name=NC_010473:3698518..3700011 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3600776

Edman degradation

PMID:18281057[2]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3429

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCGCGAAAGAAAAAAAACGTGG

Primer 2:CCATCCTCTCGGGCAAAAAGTGC

7H7

Kohara Phage

Genobase

PMID:3038334[4]

1B6

Kohara Phage

Genobase

PMID:3038334[4]

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[5]

est. P1 cotransduction: 72% [6]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[5]

est. P1 cotransduction: % [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10346

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10346

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000340

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947978

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0342

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011318

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. Weiche, B et al. (2008) A cleavable N-terminal membrane anchor is involved in membrane binding of the Escherichia coli SRP receptor. J. Mol. Biol. 377 761-73 PubMed
  3. Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. 4.0 4.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  5. 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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