cutC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CutC

Synonyms

copper homeostasis protein[1], B1874[2][1], CutC[2][1] , dinY?, ECK1875, JW1863, b1874

Product description

copper homeostasis protein[2][3]

Copper sensitivity[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005627

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0186

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00795

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

Deprecated

GO:0046688

response to copper ion

PMID:7635807[5]

IGI: Inferred from Genetic Interaction

P

The Cu-related phenotypes of cutC(del) were later shown to be due to the loss of micL, a sRNA that is encoded within the 3' end of cutC ([6]).

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

Deprecated

GO:0055070

copper ion homeostasis

PMID:7635807[5]

IGI: Inferred from Genetic Interaction

P

The Cu-related phenotypes of cutC(del) were later shown to be due to the loss of micL, a sRNA that is encoded within the 3' end of cutC ([6]).

complete

GO:0006878

cellular copper ion homeostasis

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00795

P

Seeded from EcoCyc (v14.0)

complete

Deprecated

GO:0006878

cellular copper ion homeostasis

PMID:7635807[5]

IGI: Inferred from Genetic Interaction

P

The Cu-related phenotypes of cutC(del) were later shown to be due to the loss of micL, a sRNA that is encoded within the 3' end of cutC ([6]).

complete

Deprecated

GO:0006878

cellular copper ion homeostasis

PMID:7635807[5]

IGI: Inferred from Genetic Interaction

P

The Cu-related phenotypes of cutC(del) were later shown to be due to the loss of micL, a sRNA that is encoded within the 3' end of cutC ([6]).

complete

Deprecated

GO:0046688

response to copper ion

PMID:7635807[5]

IGI: Inferred from Genetic Interaction

P

The Cu-related phenotypes of cutC(del) were later shown to be due to the loss of micL, a sRNA that is encoded within the 3' end of cutC ([6]).

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ygeY

PMID:16606699[7]

Experiment(s):EBI-1141140

Protein

proC

PMID:16606699[7]

Experiment(s):EBI-1141140

Protein

uvrY

PMID:16606699[7]

Experiment(s):EBI-1141140
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPRMEKIMAA AGPLAVTFHR AFDMCANPLY TLNNLAELGI ARVLTSGQKS DALQGLSKIM
ELIAHRDAPI IMAGAGVRAE NLHHFLDAGV LEVHSSAGAW QASPMRYRNQ GLSMSSDEHA
DEYSRYIVDG AAVAEMKGII ERHQAK
Length

146

Mol. Wt

15.873 kDa

pI

6.8 (calculated)

Extinction coefficient

11,460 - 11,585 (calc based on 4 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..201

PF03932 CutC family

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cutC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111351

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:2847756

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006252

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P67826

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7024

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12956

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:2847756

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003611

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2790

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Gupta, SD et al. (1995) Identification of cutC and cutF (nlpE) genes involved in copper tolerance in Escherichia coli. J. Bacteriol. 177 4207-15 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 Guo, MS et al. (2014) MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein. Genes Dev. 28 1620-34 PubMed
  7. ↑ 7.0 7.1 7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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