Transposon Tn5 inh:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Standard Name |
Transposon_Tn5 inh |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
A Thymidine at position 1442 causes an ochre stop codon which prematurely terminates the protein at this point. Ochre suppressing strains allow readthrough and express a functional product identical to the transposition inhibitor; non-functional |
| Product Synonyms(s) |
p4; Inh; protein 4 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
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Notes
Gene
Nomenclature
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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
Transposon_Tn5 inh |
|---|---|
| Mnemonic | |
| Synonyms |
|
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
BM_U00004: 257..1444 <gbrowseImage> name=BM_U00004:257..1444 source=Transposon_Tn5 preset=GeneLocation </gbrowseImage> |
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BM_U00004: 5562..4297 |
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
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See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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Product(s)
Nomenclature
<protect><protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
Transposon_Tn5 Inh |
|---|---|
| Synonyms |
p4; Inh; protein 4 |
| Product description |
A Thymidine at position 1442 causes an ochre stop codon which prematurely terminates the protein at this point. Ochre suppressing strains allow readthrough and express a functional product identical to the transposition inhibitor; non-functional |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
Gene Ontology
<protect><protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
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Interactions
<protect><protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
<protect><protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
Physical Properties
<protect><protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MQEGAYRFYR NPNVSAEAIR KAGAMQTVKL AQEFPELLAI EDTTSLSYRH QVAEELGKLG SIQDKSRGWW VHSVLLLEAT TFRTVGLLHQ EWWMRPDDPA DADEKESGKW LAAAATSRLR MGSMMSNVIA VCDREADIHA YLQDRLAHNE RFVVRSKHPR KDVESGLYLI DHLKNQPELG GYQISIPQKG VVDKRGKRKN RPARKASLSL RSGRITLKQG NITLNAVLAE EINPPKGETP LKWLLLTGEP VESLAQALRV IDIYTHRWRI EEFHKAWKTG AGAERQRMEE PDNLERMVSI LSFVAVRLLQ LRESFTLPQA LRAQGLLKEA EHVESQSAET VLTPDECQLL GYLDKGKRKR KEKAGSLQWA YMAIARLGGF MDSKRTGIAS WGALW |
| Length |
395 |
| Mol. Wt |
44.758 kDa |
| pI |
9.7 (calculated) |
| Extinction coefficient |
73,910 - 74,160 (calc based on 9 Y, 11 W, and 2 C residues) |
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Domains/Motifs/Modification Sites
|
<protect><protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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<motif_map/> |
Structure<protect><protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
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Structure figures<protect> | |||
Notes
Gene Product Resources
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
<protect><protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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Expression
Overview
Intracellular Levels
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See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Transcription and Transcriptional Regulation
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| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
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Notes
Translation and Regulation of Translation
Notes
Turnover and Regulation of Turnover
Notes
Experimental
Mutations Affecting Expression
<protect><protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
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Expression Studies
<protect><protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
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Expression Resources
<protect><protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Accessions Related to Transposon_Tn5_inh Expression
<protect><protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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Evolution
Homologs in Other Organisms
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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
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Do-It-Yourself Web Tools
Notes
Families
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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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