Phage phiX174 A*:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name
Gene Synonym(s)
Product Desc.
Product Synonyms(s)
Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



     

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Notes

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Gene

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

A*

Mnemonic
Synonyms

A [1], A' [2] phiX174p02 [1]


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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_001422: join(4497..5386,1..136)
<gbrowseImage> name=NC_001422:0..100 source=bacteriophage_phiX174 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

NCBI (EcoliWiki Page)

GeneID:2546406


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Notes

Links

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Product(s)

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Nomenclature

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Standard name

A*

Synonyms

phiX174p02 [1]

Product description

synthesized from A gene by internal translation initiation [3]; may be involved in shutting off host DNA synthesis [3]

EC number (for enzymes)


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Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions

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Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MKSRRGFAIQ RLMNAMRQAH ADGWFIVFDT LTLADDRLEA FYDNPNALRD YFRDIGRMVL
AAEGRKANDS HADCYQYFCV PEYGTANGRL HFHAVHFMRT LPTGSVDPNF GRRVRNRRQL
NSLQNTWPYG YSMPIAVRYT QDAFSRSGWL WPVDAKGEPL KATSYMAVGF YVAKYVNKKS
DMDLAAKGLG AKEWNNSLKT KLSLLPKKLF RIRMSRNFGM KMLTMTNLST ECLIQLTKLG
YDATPFNQIL KQNAKREMRL RLGKVTVADV LAAQPVTTNL LKFMRASIKM IGVSNLQSFI
ASMTQKLTLS DISDESKNYL DKAGITTACL RIKSKWTAGG K
Length

341

Mol. Wt

38.74 kDa

pI

10.4 (calculated)

Extinction coefficient

52,370 - 52,870 (calc based on 13 Y, 6 W, and 4 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure

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Structures

<beststructure> gene=Phage_phiX174_A* taxon=10847 </beststructure>

Models

View models at:

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</protect>

Structure figures

Notes

Gene Product Resources


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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


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Database Accession Notes
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Notes

Links


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Expression


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Overview

Cellular Levels


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Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation


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Transcription unit(s)
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Notes

Translation and Regulation of Translation


<gbrowseImage> name=NC_001422:4477..4517 source=bacteriophage_phiX174 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

Turnover and Regulation of Turnover

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Notes

Experimental


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies

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Type Reference Notes
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Expression Resources

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Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage phiX174 A* Expression


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Database Accession Notes
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Notes

Links


Name URL Comments
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Evolution


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Homologs in Other Organisms


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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools


Notes

Families


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Database Accession Notes
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Notes

Links


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References


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  1. ↑ 1.0 1.1 1.2 NCBI: Enterobacteria phage phiX174, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_001422?
  2. ↑ Barrell, BG et al. (1976) Overlapping genes in bacteriophage phiX174. Nature 264 34-41 PubMed
  3. ↑ 3.0 3.1 NCBI: A* [Enterobacteria phage phiX174 sensu lato] http://www.ncbi.nlm.nih.gov/protein/9626374

Categories


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