Phage lambda xis:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

xis

Synonyms

xis, lambdap34

Product description

Excisionase

EC number (for enzymes)


edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki. <protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0019047

provirus integration

PMID:1055366[1]

IDA: Inferred from Direct Assay

P

negatively affects phage integration (Int activity).

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Phage lambda Int

PMID:1396573[2]

See Fig 4.

Protein

E. coli FIS protein

PMID:1396573[2]

See Fig 4.

edit table

</protect>


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki. <protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MYLTLQEWNA RQRRPRSLET VRRWVRECRI FPPPVKDGRE YLFHESAVKV DLNRPVTGGL
LKRIRNGKKA KS
Length

72

Mol. Wt

8.604 kDa

pI

11.6 (calculated)

Extinction coefficient

13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_xis taxon=10710 </beststructure>

Models

View models at:

edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

</protect>

Structure figures

See Help:Jmol in EcoliWiki

Biological complex of xis interacting with DNA, PDB:1Rh6
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >1RH6.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>









<protect>

</protect>

Notes

See Crystal structure of the excisionase-DNA complex from bacteriophage lambda[3] or PDB 1RH6.

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. <protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki. <protect></protect>

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Nash, HA (1975) Integrative recombination of bacteriophage lambda DNA in vitro. Proc. Natl. Acad. Sci. U.S.A. 72 1072-6 PubMed
  2. ↑ 2.0 2.1 Numrych, TE et al. (1992) Characterization of the bacteriophage lambda excisionase (Xis) protein: the C-terminus is required for Xis-integrase cooperativity but not for DNA binding. EMBO J. 11 3797-806 PubMed
  3. ↑ Sam, MD et al. (2004) Crystal structure of the excisionase-DNA complex from bacteriophage lambda. J. Mol. Biol. 338 229-40 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_lambda_xis:Gene_Product(s)&oldid=1492008"